e778baf70ec5a2fb3171e4bcc3ff06a9 *DESCRIPTION
2d643bca0c2771cb295bbe8fcd018b80 *NAMESPACE
ce30a5ae069d42c8511cdd477b01f4a9 *NEWS.md
15e4239ce428b50dbe134a685c6d8673 *R/AllGenerics.R
8de4fda04ce276a7a81a720ec3e2d7a0 *R/Methods.R
3f9050c15c880acee8ae36eee82480d7 *R/MethyLumiM-class.R
9707c158fcd670dc75a61a477ebc3f66 *R/MethyLumiSet-class.R
95b58bce61aba739fa219dea7d2c2d1b *R/MoreGenerics.R
99442ef49e022716a16206a5c0c4eea2 *R/bgcorr.R
04fb505831949d89950bc124ebe27cf1 *R/coercions.R
7ce13cf94744ba805d59019eb2526db5 *R/data.R
7ddda4a0d10007859186d2f22b777325 *R/detectionpval.R
5b9c51e66a215175feda5287bb7613c9 *R/featureFilter.R
825842724bc890b3db1c43e0da56676d *R/mclapply_replace.R
cdaaa445a498b0d9078c68b5fcc0f3f9 *R/methylData-class.R
616f2c7ba11e0e779251487682340b01 *R/methylumIDAT.R
d3ad5f6c0afc4552f0ac3a5a4d8befb1 *R/methylumiCSV.R
5c6dc73f75206aa10a875817e9acbab1 *R/methylumiR.R
abe17d13f47791c1047180e4a4ffa03e *R/normalization.R
de7c377cdfff60900445c273a7da3e51 *R/plotNegOob.R
1a4a827cf2bb85b4dc40a6052ecae4fa *R/qc.probe.plot.R
392082d23bee87a42246d7b56406f8ef *R/readIDAT2.R
a581d954b213dc36d73fd43ee8fe8fae *R/stripMethyLumiSet.R
2ea4d8b99826c91f897321a04ef48459 *R/utilities.R
6a2a417375ca2c390419f70b9a0cfac4 *R/varFilter.R
55c513704f29b46d0fdaf23485e3e3cd *README.md
7ec503e95bf3038bdb69cd4125b9a681 *build/vignette.rds
e2342dc5574577b9ab070836ec8c8097 *data/CpGs.rda
256ea6e9f49b7118f56cb051c052f857 *data/datalist
c066143442880b6313d69f7024305a40 *data/mldat.rda
605acd33c56d116981420785c5d63607 *inst/NEWS.methylumIDAT
128704c0a34f7d127bbad6c9d9edbe85 *inst/doc/methylumi.R
ba100a455c3e93be1fe42fa07d4edf9b *inst/doc/methylumi.html
ae82c07601dee4fcf09f520ffe490857 *inst/doc/methylumi.qmd
3c7795d3cee5fbaf870cc135040cf6c0 *inst/doc/methylumi450k.R
4aa5056465a4bc3fd8b8b963de0e53c4 *inst/doc/methylumi450k.html
8b41df2cf7b3179e29aa0d7c46c318dd *inst/doc/methylumi450k.qmd
800a163019c69395bf5f53c39d1e372f *inst/extdata/5318317007_A_Grn.idat
b053ee83b6b53b979510056525195c5d *inst/extdata/5318317007_A_Red.idat
d7653e4ba94d91934c056b0952d85078 *inst/extdata/5318317007_B_Grn.idat
7b93007d69d2815fd76dcb939476321a *inst/extdata/5318317007_B_Red.idat
3e0fd1b09ee3bb4c4d7a2640bf404fb7 *inst/extdata/5318317007_C_Grn.idat
cbde378c2612fd4326038e53ab360300 *inst/extdata/5318317007_C_Red.idat
68fd6ecb62288f650aacb6068f0edab6 *inst/extdata/exampledata.controls.txt
c1f7dfd0c77d07d49e88be874eff863c *inst/extdata/exampledata.samples.txt
a694c988f6429da6b165615783ba038d *inst/extdata/samples.txt
9a616c2e54f32fd5e57fbf9c02d81cee *inst/extdata/substitutions.txt
82cd999bf75873678b1775e4a12f4652 *man/CpGs.Rd
155e5a654692d2450de6746c21d4f356 *man/IDATsToMatrices.Rd
dca221c9c0be7738a65413610ea3dcfa *man/IDATtoMatrix.Rd
3a50650d32b872cdd542fe8a0860ddcd *man/MethyLumi-class.Rd
34efadd0546e894eaf93354372e6c8cf *man/MethyLumi-strippers.Rd
f6ee6be3539174a86ecdd632a3dec5e3 *man/MethyLumiM-class.Rd
8228fe7e244c36da2fcdddd6d086fd06 *man/MethyLumiQC-class.Rd
98e10358fc85c8ac639220cd7abb50ea *man/MethyLumiSet-class.Rd
cc2688e7256b3b125d78225fb609ecec *man/estimateM.Rd
06002be5a90265fc173d808a58c3a911 *man/extractBarcodeAndPosition.Rd
0501503b6ffc9902f37320b72fc1bd48 *man/featureFilter.Rd
2f435fd89749fd57d8e54d8ff2699bdc *man/generics.Rd
9495de73afe88e5a1e059296ab59dcf4 *man/getAssayDataNameSubstitutions.Rd
4eae028481d7be1cdd652bca7f9278fc *man/methylData-class.Rd
b13a8b63bf40250d6510b0cbb95b98a5 *man/methylumIDAT.Rd
b974436bfd83e5f2ee098d0edf4ea825 *man/methylumi-package.Rd
49f1d633698c35a988092b1f28cf4cf4 *man/methylumiGenerics.Rd
541d356e9abb669fc69b3fa10d996c57 *man/methylumiR.Rd
2bd32a3ed14487b0a7f6f48abb6b7128 *man/mldat.Rd
0b095fea19db99dc3e73612f6d14753c *man/normalizeMethyLumiSet.Rd
ae01b4646be85e34bf1e2b984efe98f0 *man/plotSampleIntensities.Rd
90b89c75894242d510503f0c672db233 *man/qcplot.Rd
08cae0b8b1a9363365f62755ec8b7a47 *man/tcgaPipeline.Rd
bb7ab6223a1516fc5f6ceb30c5bd2f9e *man/varFilter.Rd
45d0df121dd8b52c36975421c04aacbc *tests/testthat.R
5a21d3bc454608a741dfd041e7e71ccb *tests/testthat/helper-methylumi.R
be00fd19af7a6f597d418d31b21bda50 *tests/testthat/test-methylumIDAT.R
2b00e8ec4aee33a0867a74b797a14447 *tests/testthat/test-methylumiR.R
435e6003029277909c72e513bdf867b1 *tests/testthat/test-mldat.R
b1814c3e36dd64ec9bc291134d196f8a *tests/testthat/test-plots.R
ae82c07601dee4fcf09f520ffe490857 *vignettes/methylumi.qmd
8b41df2cf7b3179e29aa0d7c46c318dd *vignettes/methylumi450k.qmd
