6587b53a3fd1c1d1c4c303ec35eeddde *DESCRIPTION
f82e296e77e56ebe00f3105bb8467e38 *NAMESPACE
cb08942d663fc075a8b2b812e2216ef1 *NEWS
34eefde7f29a9a295d092cd636e30e06 *R/TPP2D-defunct.R
104eff945b2a27f03be458b5448a7b7b *R/data.R
5270f0cd82c643d3af12e7c6b9a0987b *R/estimate_params.R
984d079afeb35d96bf7339aae5edc416 *R/fdr_funcs.R
293dc94d60af08ea3f869b9bb31f50ab *R/full_analysis.R
add8a52706253f921bdcb8f3375f5bd0 *R/helper_funcs.R
1f0a9335a2e93b8e9de93896c63d46c2 *R/import_funcs.R
192ee7ec61445290cbfacf64b8e6d880 *R/null_bootstrap_funcs.R
1a1b7799d5a1ed87641613d51fcd68cb *R/optimization.R
d01f15d9669084392e21fb9c481c4a14 *R/outlier_filtering.R
62dd8ef773ffee961360e2730bb15e5a *R/perform_analysis.R
abff4bd5de756024408cfd1f14c45eb2 *R/plot_funcs.R
956d8bc136c7c95b5b28c734c9fc5623 *R/prepare_data.R
efcf7a1db5c41d89b9b7a1f801d22c15 *R/sysdata.rda
99946285a1b156f410ce03772bf66e8f *R/tpp2dExperiment-class.R
051cc904e0a74ef7b64fa6b4c2a8bea7 *README.md
ceed88fbf3f716595e82cb330147c2fe *build/vignette.rds
14fb537eddbf345907eb0ab3b706f59c *data/config_tab.RData
9ac3ace416200ae88cffb8746d8e77d1 *data/raw_dat_list.RData
7c8002eb3a19edcae874e3f6c9ee5ba3 *data/simulated_cell_extract_df.RData
1294ab5890fd5229fc9287f996185596 *inst/CITATION
0677c252b9f1e7005bb52080ce4e387a *inst/doc/TPP2D.R
81c29118ae7d5b5c6e0efbd9fa0f3dbc *inst/doc/TPP2D.Rmd
5d05da74283bd42c070aef6fc8e47d6b *inst/doc/TPP2D.html
7cf733efa65d1ce11d8bc9fc729bfd70 *inst/tpp2DHexSticker.png
ed9377b023b7f787da9fe54c875b65ab *inst/tpp_2d_schematic.jpg
ac58cec5faf194758eed1eebdafe77b8 *man/TPP2D-defunct.Rd
0355f9169c0b40b3f6199850c8b873f0 *man/TPP_importCheckConfigTable.Rd
557f49c41ebaa260bfcd7c2baaf062f3 *man/annotateDataList.Rd
823670d4439f112014978ac5f212771d *man/bootstrapNull.Rd
8cee8febf19c4f796bf0005cf6938234 *man/bootstrapNullAlternativeModel.Rd
2ae35815fc090499a8b8b9c5f6714d08 *man/bootstrapNullAlternativeModelFast.Rd
38c901b05038b3bcd33bebe8abd1febf *man/competeModels.Rd
0e0f8f6369bc09ca94757944e8be5168 *man/computeFStatFromParams.Rd
2a9858d626bc1b6ddf7167e5d08cb85f *man/computeFdr-defunct.Rd
2be87146658507fdeae292e366463dfc *man/computeFstat.Rd
82fcb861a9ab1b058d50e144d7bd93ef *man/configWide2Long.Rd
f4d227328902258d91b027b9a3616e99 *man/config_tab.Rd
fcb8941d8210c4466abf8eabde4a4074 *man/filterOutContaminants.Rd
030aadccc1f4b2ca90dc1a8c403f4aaf *man/findHits.Rd
592608a50e2ea96ca989fdffca128512 *man/fitAndEvalDataset.Rd
744694ac476a28fc629a299674cb1fcd *man/fitH0Model.Rd
5d5a2ea40b000b11e1f15116053949d0 *man/fitH1Model.Rd
002ca21ee05ba298ab5eb915e31ce5d6 *man/getFDR.Rd
4482a7084d974c0e7d28b61f0b791e23 *man/getModelParamsDf.Rd
65d4ef42273b8322bc08a25456f737e5 *man/getPEC504Temperature.Rd
f5149327f49141c7a653fc791f8f7381 *man/getPvalues.Rd
315b320d2e308903389953d2c9af664d *man/gg_qq.Rd
d962c2629d4d2214e0087a9c2c747794 *man/import2dDataset.Rd
17f926b3c90ca8cce987b76f1f773ebb *man/import2dMain.Rd
d51931ad76460c2776ccc47c083fb9ac *man/plot2dTppFcHeatmap.Rd
d09ca55080942fa8a8159f4f460d3abb *man/plot2dTppFit.Rd
b44cdf36f1d71cb2d11f9ca8b0c47b80 *man/plot2dTppProfile.Rd
cc0ac3763c798113164c241ce6de666b *man/plot2dTppRelProfile.Rd
b5601f84eb07d1303404293c9c12c4a8 *man/plot2dTppVolcano.Rd
adecc2af0e9c9fa53bafb950c6c64377 *man/raw_dat_list.Rd
3b1c82e87b5e396846bb3faa0ff04fe0 *man/recomputeSignalFromRatios.Rd
5ded45252c7522623d9dde172b84eac6 *man/renameColumns.Rd
feda94073cdacdc98f7ab9113f5f7bed *man/resolveAmbiguousProteinNames.Rd
0ec0e19fbe7bf4f3374f8f795aa95d2e *man/runTPP2D.Rd
5a5a2bb379237e7ade35755abf679f13 *man/simulated_cell_extract_df.Rd
db7e06532873ffda13ae694dda6eb9d5 *man/tpp2dExperiment-class.Rd
8e20db828ffda41fa6521e1b626d6734 *tests/testthat.R
69838fab113c101b3e204f4b8a8c6d57 *tests/testthat/setup-2dtpp-dataset.R
ff2b4aa7efc834dc557e4379b2fe2a84 *tests/testthat/setup-raw-2dtpp-dataset.R
9f3c30764ec8166324f3251815f9d799 *tests/testthat/test-bootstrap-null.R
1d8976181d017bba5da95c2dee97b721 *tests/testthat/test-compete-models.R
5834dd105f40fe8bcb46cf47bc2f07d9 *tests/testthat/test-compute-F-stat-from-params.R
e78b5bda91f9bb91e49384822f4ae971 *tests/testthat/test-fits.R
6d8f00f6860336cc6e89b4f2b763dc36 *tests/testthat/test-get-model-params-df.R
1c00edc418d433fc7e619cff2722d79a *tests/testthat/test-import-raw-data.R
717f001373ba6421f389b1fbbc3825ba *tests/testthat/test-plotting-funcs.R
f24895aeef8b95e4211688b1b4830752 *tests/testthat/test-recompute-signal.R
e08712bb3559ab745b5dae4004a165ec *tests/testthat/test-resolveAmbiguousProteinNames.R
81c29118ae7d5b5c6e0efbd9fa0f3dbc *vignettes/TPP2D.Rmd
c9ab8d601a27b808569b337f2c817022 *vignettes/bibliography.bib
a105e8d00885a07130291cca43c1cfa9 *vignettes/cell.csl
ed9377b023b7f787da9fe54c875b65ab *vignettes/tpp_2d_schematic.jpg
