Package: PhenoGeneRanker
Type: Package
Title: PhenoGeneRanker: A gene and phenotype prioritization tool
Version: 1.21.0
Authors@R: c(person(given="Cagatay", family="Dursun", email="cagataydursun@gmail.com", role=c("aut", "cre")))
Description: This package is a gene/phenotype prioritization tool that utilizes 
    multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene
    and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking
    using random stratified sampling of genes/phenotypes based on their connectivity degree 
    in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.
License: Creative Commons Attribution 4.0 International License
Imports: igraph, Matrix, foreach, doParallel, dplyr, stats, utils,
        parallel
Suggests: knitr, rmarkdown
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.1
biocViews: BiomedicalInformatics, GenePrediction, GraphAndNetwork,
        Network, NetworkInference, Pathways, Software, SystemsBiology
git_url: https://git.bioconductor.org/packages/PhenoGeneRanker
git_branch: devel
git_last_commit: 58c8c2c
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.24
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-29 00:25:37 UTC; biocbuild
Author: Cagatay Dursun [aut, cre]
Maintainer: Cagatay Dursun <cagataydursun@gmail.com>
