90186953f804c3a59ab27eb6011da684 *DESCRIPTION
bee597dbe03f7a091fd0454085816595 *NAMESPACE
262e4f00bda54e8b17e406d4c5c77e37 *R/AllClasses.R
7555536727ea496af287f6f4eae6eed6 *R/AllGenerics.R
9a77cfc52cce0e43c34298753e875dff *R/ContactMatrix-methods.R
8e4010c6f7a068c851cc6ee15690657c *R/GInteractions-methods.R
e718f7df8ebd5ed01489814a1e21c364 *R/GRanges-methods.R
e8ead978ea33c60ab111f4f0eb3d7d46 *R/InteractionSet-methods.R
f398c2a152bf99e63f67a1acfc3debda *R/boundingBox.R
67314cecd6005e4973166a6d67f35e01 *R/conversion.R
6809b75162f217715f65b5488c07c6fb *R/distances.R
c6d32707ac1a8449bce65babedf9fad0 *R/getset.R
6056189505e11a73c64dd8d6c2626fe9 *R/linearize.R
e40a894844db7501a04d4ba7c0e52a6c *R/linkOverlaps.R
fe4c922fe74ebfeaad023c1c0278c66e *R/matching.R
61ca17b01f1df8d7e267112cedcb228a *R/overlaps.R
0718df395c0e83e7b8e3c1f822e5033d *R/pairs.R
2c4a2ab839afffbe82602bd32c8e65a1 *R/swapAnchors.R
96851bbdd01a8aef51e9279c856a19bd *R/updateObject.R
6bb90fa53edc72f800793a91b9a6e4b1 *README.md
04c23dc9c71954b067f8520227a96062 *build/vignette.rds
79c5eff7c7c0e667658f88cf1c017ba3 *inst/CITATION
263412d3ed18ec7a30df7311ef07d011 *inst/NEWS.Rd
841f2349d32de781d0f435f4adcf2d7c *inst/doc/interactions.R
8c82ddc7b196aebce4b6398551d7c737 *inst/doc/interactions.Rmd
c40e93194408048a2a0881f367ba1432 *inst/doc/interactions.html
724a106f415493b5fad8171e7b16429c *man/ContactMatrix-accessors.Rd
b11132d2e9f94de128aaa9403ab2fbe4 *man/ContactMatrix-class.Rd
f7721e96fffdce5861bf2266b7a9fce3 *man/ContactMatrix-distances.Rd
2c1089141e76ed5740e63ad0190e7762 *man/ContactMatrix-overlaps.Rd
85bf9d0aa7da8982970d541ae739859a *man/ContactMatrix-sorting.Rd
a8d977a61aa40e5a95455ead85ad9b4e *man/ContactMatrix-subset.Rd
d7d9943e97f3350e0280422b7c24e7b8 *man/GInteractions-class.Rd
bfbdea7dd010b72ff5b10413dcca2d26 *man/InteractionSet-class.Rd
ce2965b6eac9404a87a98a4171d289f4 *man/boundingBox.Rd
f891f4c222aad72a10754cc207adf036 *man/conversion.Rd
cf2480d463e93a5abb396d4fee8647e9 *man/distances.Rd
9ae792cc125cf4ae059e123f13743a7e *man/granges-methods.Rd
dc5d9f8c9720eff048ab757cbbe116c9 *man/interaction-accessors.Rd
bbd602d91309922b8553cbb874090b41 *man/interaction-bind.Rd
4801cbde89784a12c98fa5849738a53e *man/interaction-compare.Rd
e1fc44c01ccecac9bf40b03784e9c961 *man/interaction-subset.Rd
830cc3b3d3a89192feae6c3f2268a0d8 *man/linearize.Rd
e86f5077a91bcffc13af72e004adb27d *man/linkOverlaps.Rd
022755e6a73bd21dbd9f981db0c9c3e1 *man/overlaps.Rd
aa1ef08469156f6ffb2d34cd66b64db5 *man/pairs.Rd
c65b628e209427edd029f05c1ac4204f *man/updateObject.Rd
1fa30ddc01566cddab812884f0894367 *src/box_bounds.cpp
fa6fa8b350c2f51b281b0b39b8d4a3fd *src/detect_overlaps.cpp
0460d9da8222bc5fedf80ed915246032 *src/init.cpp
48cc87509afe2698c30189802244ebc8 *src/iset.h
9d3326402a19afd795afa1ffa0bbcb4f *src/link_overlaps.cpp
d07fcef3778439757481e1b954f6344e *src/overlap_utils.cpp
e161fd8fd02cbd3b5110f00d2b837658 *src/overlap_utils.h
c1987ae1358fbbe360423e55b2ac5a88 *tests/testthat.R
a615c93f328dad1f8b3c2fbcd8c266c5 *tests/testthat/test-CM.R
6ff42cd225725ef8e2bf15ee8fde0c05 *tests/testthat/test-GI.R
56caa4da64fb6164213ed6b7be5b8cec *tests/testthat/test-IS.R
c874ae818fce473cf859af7d14223a09 *tests/testthat/test-box.R
2b9c808bb75b7a47215aa0f2802b1ac1 *tests/testthat/test-compare.R
2dfec0a9450c9a3e274c35f95d77f894 *tests/testthat/test-convert.R
33fb3884a3bcdfdda00e7d78544dfa4d *tests/testthat/test-dist.R
a0b98fff3194974ccf4682139c56f0eb *tests/testthat/test-grmeth.R
882554811c4d120b62fba70bc50a52da *tests/testthat/test-linear.R
a66002351a781a2a88202c35ca0f4a22 *tests/testthat/test-link.R
96776c3bbbf3a4d25c9dd3308c72baa2 *tests/testthat/test-olap.R
8c82ddc7b196aebce4b6398551d7c737 *vignettes/interactions.Rmd
