37234fae33848f1310c5ca712617283d *DESCRIPTION
85c7b8b857abd6c0e208aec752d0c977 *LICENSE
95119ea280432fdb856473021cb52597 *NAMESPACE
60e1088924dd9045c058781f9752afee *NEWS.md
6abbc153250ef57754325dad2ad4089b *R/FSmethod.R
0587998a3d2750671925fd104f2c90ac *R/FreqInteractors.R
8c0c98946ebb3649a1efbdc64d0ed252 *R/Gold_ReferenceSet.R
bb6f6b6f6e81741d8484df54ef9019f0 *R/UP000464024_df.R
bfa084b777d7a897aa01b2795e84458b *R/calculateAAC.R
140ceff1d41ae592250fcc26538e502f *R/calculateAutocor.R
481799e9a8d2de45dad774faf24b60f8 *R/calculateBE.R
7be44fefd49df29fd24c4734a1ed0b16 *R/calculateCTDC.R
c3769c196fbb8a17bed98307c5863bce *R/calculateCTDD.R
162fe1ca32e505effc94daf942d3b399 *R/calculateCTDT.R
7c24380d95dfe217a10b2184f41dd2db *R/calculateCTriad.R
49001f032d148367ff2b5f0867168b9c *R/calculateDC.R
ad70b0e61e2bc1032085cb7e91cad9c9 *R/calculateF.R
b5e14781b774524818d76e3d20fa5452 *R/calculateKSAAP.R
e51ffcf77e3087e71a5c6d7091c086de *R/calculateQD_Sm.R
f65180bbb4cbf0bc91a95fdd05fe40bd *R/calculateTC.R
7a123ac4bb51f5422e58b878fb783a31 *R/calculateTC_Sm.R
8599121adaf8a749ea74697597aa40d0 *R/corr_plot.R
804e429782b06a2cc3eb2ac328788e4f *R/enrich.df.R
571196587b78065dc2606cbc3b88da18 *R/enrichfindP.R
7f75c2bdff19b49b2ed6189308ef1719 *R/enrichfind_cpx.R
62d272ba86349a17c3685114dcb66ea3 *R/enrichfind_hp.R
6b836ae22ae40e7134ec93a418acca38 *R/enrichplot.R
e9289459543c2d8df837ae9063112a19 *R/example_data.R
e3caa219b9d5ec6b884dd819da7b29b4 *R/filter_missing_values.R
15833f91dd8d4c0b51d90da6d74016ae *R/getFASTA.R
bd31fc00ec2b8d453877cfdde8d50449 *R/getHPI.R
f4b405cfdd9acf2a34500356ec350bde *R/get_negativePPI.R
8be4baf1680d64be11ab657ef5068396 *R/get_positivePPI.R
f224f977f0cfe80fce973159ec77a24f *R/host_se.R
fbe5c4a63bc631e087f45be56ce295dd *R/impute_missing_data.R
dc0d8ba3685cc5527f7f0b8b7f54ba45 *R/plotPPI.R
86cb1829dad4948f3a282c3ccb1398b2 *R/pred_ensembel.R
33df2db781d635576ee666ebeff67e83 *R/predicted_PPIs.R
5a31333cd5d04ffab8a4e6bb9224bad5 *R/run_clustering.R
79ddf9d3ee44ebe86da434bb5ed487df *R/sysdata.rda
350a1911baa780f723e622fb4e2c83a3 *R/unlabel_data.R
4c287768d23aff2f4f1503264d54c1e8 *R/var_imp.R
806959f412ad9b6c689abf963a1fa6fb *R/viral_se.R
fe4090d2816cdc069a73bc2d6f8b9614 *README.md
3df9dfaf6810747c7e055d82d939ec4a *build/vignette.rds
d4acca426b1d0769e55b80944bef0ac0 *data/Gold_ReferenceSet.rda
7d76eb7eee75ec423537a1c93d96f839 *data/UP000464024_df.rda
f9a4e867aabcfe9a858601ff0720f06e *data/datalist
5441153cd368eedc29b640022be013b2 *data/enrich.df.rda
9fa7c688fdf7ea8cedec2e6a1c2d2035 *data/example_data.rda
52b6c5d71e101e0c449b1a99703874a1 *data/host_se.rda
d3ad04b046d9476897530c7aab9f87cc *data/predicted_PPIs.rda
7df0971bf5df818d8575021ae8c0628f *data/unlabel_data.rda
b37e672d6b17a0cc41428ef5c24fb678 *data/viral_se.rda
8bfa00592b0740b3294f7fc917f2e4a1 *inst/doc/HPiP_tutorial.R
4cc0135537705ffd4cf2f29b2cd8d573 *inst/doc/HPiP_tutorial.Rmd
2275aeb2cbef7506fb22706e22cf68e4 *inst/doc/HPiP_tutorial.html
0c58ef02dc11e90eab4d304185ef7df3 *inst/extdata/AAidx.csv
c3d5e354e458ce50f9e94628fa118483 *inst/extdata/README.md
a97b18c460f2828bfff3b7b7c6b39539 *inst/extdata/TP_set.csv
4b7079233da6d2a7c57c4d9f70409a5d *inst/extdata/UP000464024.fasta
b432b456f9b0b4126d521ef0378b5894 *inst/unitTests/test_calculateAAC.R
320b7525bbd0b69c2213d4b6eb79c7b4 *inst/unitTests/test_calculateDC.R
53bccabdf08535bd65cb38439141ba02 *inst/unitTests/test_enrich.df.R
ce3efe19d78854093c22f4fd83666a54 *inst/unitTests/test_getHPI.R
106de1012d376839e0743d6142737050 *inst/unitTests/test_get_negativePPI.R
cc198c7c49281967ac99c5c363aef93c *inst/unitTests/test_get_positivePPI.R
781e580c73af13945434b68d356aec0a *inst/unitTests/test_pred_ensembel.R
831fc6c165b10767262b5846864f076e *man/FSmethod.Rd
ceb187f9add9bbe2f9f13288c03dff61 *man/FreqInteractors.Rd
7b1cb9a730d826b14db6312c560a5e59 *man/Gold_ReferenceSet.Rd
664ea953db8ae2e97d2e5c77a3d36c79 *man/UP000464024_df.Rd
bd38b9c0b8781b9092fd3af8120a7cb1 *man/calculateAAC.Rd
22fbf6454fa4df97ffcc176b7ba5b7e9 *man/calculateAutocor.Rd
4de863688848f74063e818f468376cd0 *man/calculateBE.Rd
7a6b742405afe81549d85c0a54f17b2f *man/calculateCTDC.Rd
5ba8992a72e40482dfb506cb43f89f59 *man/calculateCTDD.Rd
6b228a6c2665310896054b6339689586 *man/calculateCTDT.Rd
37f9247d403fb3d555429adb9e9c1b8e *man/calculateCTriad.Rd
acfb03708231d338c9c7ad4255903679 *man/calculateDC.Rd
31ced314502219134e11f3ed3fe33bc3 *man/calculateF.Rd
29d43ecebd92a73adf85a228071d2e65 *man/calculateKSAAP.Rd
7f15ba468b3a33f4a30036acdfdced0c *man/calculateQD_Sm.Rd
37ce6dbe2dbd4c32c237dacf30773162 *man/calculateTC.Rd
6d78d51213ba3867876ad51ce76f8bf8 *man/calculateTC_Sm.Rd
cb6fb54fc5740400fc9c7afb8326a7ac *man/corr_plot.Rd
001ebc4b41976f1bc4515d379aada9b5 *man/enrich.df.Rd
6166e0559be056d13eb21185010977ed *man/enrichfindP.Rd
291ca15f0e9860c9efc41ab49e4e560d *man/enrichfind_cpx.Rd
d7f96a452de789e6f027a3f3101c359c *man/enrichfind_hp.Rd
d5f3d59e209dd6d6a077abaa449f902b *man/enrichplot.Rd
1ace04b915580c7d46bda72d0c16fd11 *man/example_data.Rd
1508490c0e477b07dff9d83242461bb2 *man/filter_missing_values.Rd
5f072d05462cdc1cb1adbccd24ca8211 *man/getFASTA.Rd
28b7c9ba9a959673933d20b4b633150e *man/getHPI.Rd
3e87f567995f28dc96500f74ecd37cfb *man/get_negativePPI.Rd
a4f509478fb5a33ce77ae374c4765133 *man/get_positivePPI.Rd
2674162ec4c585544113c3bfbccf9a20 *man/host_se.Rd
c6a353f39735a011b295d8ef8ed95ce3 *man/impute_missing_data.Rd
62ea9106784ccbead6261432017b8ee3 *man/plotPPI.Rd
0bdef8d04e1dc797c80b9d39e7f8b94b *man/pred_ensembel.Rd
8a245bec1d5bf373edf47d1a334704bd *man/predicted_PPIs.Rd
510e0e643577db4235af17e3e543ea74 *man/run_clustering.Rd
f6f34cbb1bfe4463d7e8d62ba0287db5 *man/unlabel_data.Rd
5281541ef8fa286987d1b5d38044bd6a *man/var_imp.Rd
7db45e80202eed7688be502559350184 *man/viral_se.Rd
09c898729e1e9750794abc8932287541 *tests/runTests.R
db4cd8a205a02e2acaadc845f7ef8e14 *vignettes/Figures/CTriad.png
fcd717a65251fff7bdff93b9c2e3e337 *vignettes/Figures/F-1.png
3b709622e19d06ce1d2376e8fd5e6d3f *vignettes/Figures/ROC_Curve_new.png
f61f11ed22b1ac5596152cfa399545d7 *vignettes/Figures/ctd.png
54c9986a130d946555440f25671d5c84 *vignettes/Figures/point_plot_new.png
5372f06ba055c6f774b40e3ceadd27ec *vignettes/Figures/pr-curve_new.png
50055d0a5234ea9f03da8bd915c7ccdf *vignettes/HPiP.bib
4cc0135537705ffd4cf2f29b2cd8d573 *vignettes/HPiP_tutorial.Rmd
1cad9a1953295837c7d6ee0ebf1e5a52 *vignettes/bioinformatics.csl
