# everything from .gitignore is not needed in the Docker image
.Rproj.user/
.Rhistory
.RData
.Rprofile
.ds_store
*.DS_Store
*.Rproj
.vscode
.idea
inst/doc
inst/bin/
inst/python/*.pyc
inst/python/__pycache__/*
inst/blaze/__pycache__/*
vignettes/*.html
vignettes/*.R
inst/data/genocodeshortened.v33.annotation.gff3
inst/data/GRCh38short.primary_assembly.genome.fa
inst/data/align2genome.sample.fastq.gz
inst/data/trimgff.py
doc
Meta
check
docs/
/doc/
/Meta/
R/shortisoformtest.R
vignettes/.build.timestamp
**/*.log
vignettes/FLAMES_vignette.md
**/.smbdelete*
check
src/testfuncs.cpp

# we also do not need to copy the Dockerfile itself
Dockerfile
docker_build_status.txt