Package: DuckDBGRanges
Version: 0.99.4
Date: 2026-08-07
Title: DuckDB-Backed GenomicRanges Implementation
Description: 
    Provides DuckDB-backed implementations of GenomicRanges data structures
    for efficient, out-of-memory operations on large genomic interval datasets.
    The package includes DuckDBGRanges and DuckDBGRangesList classes with
    optimized range operations including restrict, flank, shift, findOverlaps,
    and distance calculations. Ideal for variant analysis, scATAC-seq peak
    analysis, and other genomic workflows requiring memory-efficient range
    operations on large datasets.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
URL: https://github.com/Genentech/DuckDBGRanges
BugReports: https://github.com/Genentech/DuckDBGRanges/issues
Depends: R (>= 4.6.0), methods, stats, DuckDBDataFrame, GenomicRanges
Imports: bit64, BiocGenerics, S4Vectors, IRanges, Seqinfo,
        DelayedArray, DBI, dplyr, dbplyr
Suggests: knitr, rmarkdown, BiocStyle, testthat, microbenchmark, arrow,
        TxDb.Hsapiens.UCSC.hg38.knownGene
biocViews: DataImport, DataRepresentation, Infrastructure, Sequencing,
        Software
VignetteBuilder: knitr
Encoding: UTF-8
Collate: 'DuckDBGRanges-class.R' 'DuckDBGRanges-package.R'
        'DuckDBGRanges-utils.R' 'DuckDBGRangesList-class.R'
        'DuckDBGRangesList-utils.R'
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/DuckDBGRanges
git_branch: devel
git_last_commit: e2cad47
git_last_commit_date: 2026-08-07
Repository: Bioconductor 3.24
Date/Publication: 2026-08-09
NeedsCompilation: no
Packaged: 2026-08-09 21:30:49 UTC; biocbuild
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>
