06f70e2dcaf9d8f5b745456ba846b075 *DESCRIPTION
582eeed044ed6c56d71215ffe07eafa3 *LICENSE
836ea128038beb0a1a85499d6106a9c6 *NAMESPACE
c72cb1c7b9323a9d8d898e45cbe36f05 *NEWS.md
8d1bd439c81c6b5e9219aa6f0936fcb8 *R/CreateCrcBiomeScreenObject.R
e4377838bd6c09b9b2784e69134d69f9 *R/CreateFromTSE.R
9b6b9b4cbe601668ff1e96901d8e256a *R/EvaluateCrcBiomeScreen.R
af5d970541e125d37efae44c255cf55a *R/EvaluateModel.R
304d7b3220e15f06e38997b96838e9f9 *R/FilterDataset.R
20035a342a7eed7ddebc3a6a5a62c777 *R/GlobalVariables.R
cb52622b38299d8d499db7665d2b28c5 *R/KeepTaxonomicLevel.R
ae4e5651f54c0336ab0edc23109ca2f3 *R/LoadTaxaTable.R
de4aeb638c29d352cd11d299e17505f9 *R/ModelingRF.R
4db296df3a04ae35cf87bf7040be6df3 *R/ModelingRF_noweights.R
a1aa855a00980fd3d2e499a6b2f9d1c4 *R/ModelingXGBoost.R
1768ea0813a58f0ba44d6a7542246345 *R/ModelingXGBoost_noweights.R
a11d716d67c4492339b8c1d8936d6284 *R/NHSBCSP_screeningData.R
137abf170ad46a05b2de24ae4ce32528 *R/NormalizeData.R
2bbf02dce338f6e612ac1c3e4d6ed4df *R/PredictCrcBiomeScreen.R
c652cbf3ac35a67a838a613aa6b3dd18 *R/RunScreening.R
8ef998d52b858c794ef4d1333d29a68f *R/SplitDataSet.R
c111e6d6edc05317a082ae9f550d4477 *R/SplitTaxas.R
817070f399174c45f84ec9af7222fe89 *R/Thomas_2018_RelativeAbundance.R
7d8e477f0f39bd836e8f50e4e9e750c5 *R/TrainModels.R
126d2382b3fc3bec0d7b24e3ad5b59d1 *R/ValidateModelOnData.R
6d0be13550040d3bf414fb0e87c8395a *R/ZellerG_2014_RelativeAbundance.R
8c3b8ba052707a7869c988f200550409 *R/checkClassBalance.R
aa8dd4c1adfaf7337593aaf4a50584bb *R/getCaretXgbTreeCompat.R
6693bea8ae0cd5ac64ced626b37493dc *R/qcByCmdscale.R
0b3fcf07614891975e1a814d83232470 *README.md
f54f14db86f3e881bb9a442af6464f9c *build/vignette.rds
2c1b7259de5ba3469871751a3ad898c3 *data/NHSBCSP_screeningData.RData
6ee36288646ba005fbdff3c965d1d98f *data/Thomas_2018_RelativeAbundance.RData
e6c0720dbcbee742e86e18524fbc69ca *data/ZellerG_2014_RelativeAbundance.RData
2df7988e91c46c6843417874c3f68104 *data/datalist
8112425e8fe5a866b956d85d1cf1728e *inst/doc/CrcBiomeScreen.R
09cb1fa993ceb7e7616eaf3ae207f972 *inst/doc/CrcBiomeScreen.Rmd
d64a98021d45fd997d884ce4d94bfb79 *inst/doc/CrcBiomeScreen.html
18acaf0c2620cc989617202ddda98aea *man/CrcBiomeScreen-class.Rd
2f9543c62392f105fa16df160171f73e *man/CreateCrcBiomeScreenObject.Rd
bc7e7c850f9c2c025da44b0d98e98a8c *man/CreateCrcBiomeScreenObjectFromTSE.Rd
490c347d1036cfdc6b939222613cef62 *man/EvaluateCrcBiomeScreen.Rd
08c42cc174581c2a4ee831893e857413 *man/EvaluateModel.Rd
336b16608aa80449b772a9e405671e44 *man/EvaluateRF.Rd
77c840f8cd2c2b734c58319094b2a248 *man/EvaluateXGBoost.Rd
d85e1cd2ac36970aacd5308451d714a8 *man/FilterDataSet.Rd
1241febe11ac9292ee6cb477d9979f57 *man/KeepTaxonomicLevel.Rd
23e4fb6cde1707057de8e2ae1f8a5eb7 *man/LoadTaxaTable.Rd
2cdcb122295e63502d01e67bbebdab26 *man/ModelingRF.Rd
3f63c71e1e52db75159189633023648a *man/ModelingRF_noweights.Rd
a25186653a89dabefaa4037e9b724259 *man/ModelingXGBoost.Rd
f41eb020744b60303faa411f4292eb8c *man/ModelingXGBoost_noweights.Rd
b471f6f9ea3de9911bdf3baf6a730f71 *man/NHSBCSP_screeningData.Rd
c1c6352733c8bec83162e7568a7c8273 *man/NormalizeData.Rd
7d0610c8056030ccf28823c800b02bad *man/PredictCrcBiomeScreen.Rd
cfcee9928de83cbfb6c3350e80551832 *man/RunScreening.Rd
fff2bb30ee48b74840c6e4561cd446fb *man/SplitDataSet.Rd
8fa77244e1a1c459804fd6b40b887943 *man/SplitTaxas.Rd
0ed5a8f50441bed7d90cb539174da0a4 *man/Thomas_2018_RelativeAbundance.Rd
4dcde03bcd6fae83644c905e569b8c30 *man/TrainModels.Rd
775192e52068df50d954574295b7923d *man/ValidateModelOnData.Rd
9f2ace5c8d141ed3596a95f6acb9862a *man/ZellerG_2014_RelativeAbundance.Rd
7293cb70b8f78b607138589ff7097a3f *man/checkClassBalance.Rd
4eec8c41d46bdf17a442d68b723225e4 *man/getAbsoluteAbundance.Rd
03b83fa88ecdbc6e29ba3f3c12e79af3 *man/getModelData.Rd
66f4880e6fa3cfea882e1429575c2758 *man/getModelResult.Rd
df527aacbc79f394be46a7376f30d46f *man/getNormalizedData.Rd
41f42a6c75e540e479a7f86b8818dcc8 *man/getOutlierSamples.Rd
203d5ccd13e94434c79d86b954fcee32 *man/getPredictResult.Rd
5c480d9ea541514784e48839dd2a93fc *man/getRelativeAbundance.Rd
7b5478993985138af997da2926ab55ab *man/getSampleData.Rd
61bd7a902eec97595a0f9d88d6411876 *man/getTaxaData.Rd
0e3fa05405cd70e043b884a5a31c99a6 *man/getTaxaLevelData.Rd
f8391a7d9d96ee94961f3e4c80d49389 *man/qcByCmdscale.Rd
4a54cf667db57f511bc6f041ebea6c97 *man/setNormalizedData-setter.Rd
acf093c89bf581b0053d62594c5a7e3c *man/setTaxaData-setter.Rd
5f104c0094b7908a763835aeeabf1929 *tests/testthat.R
f05c4a396d4c606fc9c850bf4cf7bd29 *tests/testthat/test-CreateCrcBiomeScreenObject.R
4fc1d18aed154dbb35c53a46f029f866 *tests/testthat/test-KeepTaxonomicLevel.R
f57b7497214c54ae900925092d949e96 *tests/testthat/test-NormalizeData.R
ac41faa33ce56416ae91a3bfdaff3d26 *tests/testthat/test-SplitDataSet.R
ea08bd957ca1a282d368f8e84cbb3c4a *tests/testthat/test-SplitTaxas.R
b4d0f5e1950e0d82ffa0ea1de3d1e883 *tests/testthat/test-checkClassBalance.R
d7df3f12eedda8a48bb1620a3e6fb9bb *tests/testthat/test-qcByCmdscale.R
09cb1fa993ceb7e7616eaf3ae207f972 *vignettes/CrcBiomeScreen.Rmd
