f8012dbd831279e02d26c2bfb78037a9 *DESCRIPTION
fdb19250771b7c9d750e8ca1e83f1f6d *NAMESPACE
faac091b4cd83d17a8d537aaa9beccd8 *NEWS.md
73645c08305460cc91c5ed51950ae264 *R/CTdata.R
433e846f042311716748e5a8f7f45473 *R/data.R
2b7a72aaef89a3344451ea3f7dbe9277 *R/utils.R
a83dd9f6df0d51cab6cc167357124247 *R/zzz.R
ce65ee8b636c4a6cda2cb5e23e39fbc4 *README.md
7fd98b805e803781ca0c7fed27693b13 *build/vignette.rds
a70a482d3c953f5e7a2f6927d4f6a05c *inst/doc/CTdata.R
9ebf25684f2cb8f739338c0f5caffa50 *inst/doc/CTdata.Rmd
7a07bf7f2b84c08869833d68ca503c1d *inst/doc/CTdata.html
fdfdf581ee03c9969beeadfef4d30479 *inst/extdata/CpG_positions_all_prom_hg19.rda
6469e5455ba8eeb1bfda29b3c7c6bb10 *inst/extdata/all_genes_prelim.rda
384e9229672bcf7a404af0271c4aa471 *inst/extdata/all_promoter_regions_hg19.rda
76c64ada5d6604e5081676380ca3cc7e *inst/extdata/metadata.csv
5c919bf6164fbf6e9911582fca66828b *inst/scripts/010_make_GTEX_data.R
bbd667fdccd24647b68438fba4771228 *inst/scripts/020_make_CCLE_data.R
563a54fb054ea43993e51149a47ff1dc *inst/scripts/030_make_normal_tissues_multimapping_data.R
09c4242884bdc6887a4f72dd773faf68 *inst/scripts/040_make_DAC_treated_cells.R
90b422c6d4d7d35624ff88593b7948b1 *inst/scripts/050_make_DAC_treated_cells_multimapping.R
23db1057af6157ec48e17bb7177e051c *inst/scripts/060_make_TCGA_TPM.R
b6a6785333ad615f5f5d695712f14496 *inst/scripts/070_make_testis_sce.R
718e5ece2076af6621cac59d5f087cfa *inst/scripts/072_make_FGC_sce.R
37db609c91c25ea9aeb0f0f33185c6e5 *inst/scripts/074_make_oocytes_sce.R
dee1fa515d3a492c7ecf23b0ec442cf5 *inst/scripts/080_make_scRNAseq_HPA.R
304bc167ebb127b6f74b97c2ef18abb9 *inst/scripts/081_make_HPA_cell_type_specificity.R
906f57192b65efeefca1a072d91ca93a *inst/scripts/090_make_all_genes_prelim.R
49c1eb5c6e3fecd72ed103f337b5e9e1 *inst/scripts/100_make_methylation_in_tissues.R
4b6a55e846343b49fefc16d9a1282bfa *inst/scripts/110_make_mean_methylation_in_tissues.R
174bc075206789f0d44ce8dfe47653a0 *inst/scripts/120_make_TCGA_methylation.R
9fafcf21c164562338d443838c7fae54 *inst/scripts/130_make_all_genes_and_CT_genes.R
35111657622b9f9b54c7ec90c9e90790 *inst/scripts/132_make_CpG_positions_all_prom_hg19_and_all_promoter_regions_hg19.R
ce497686761a08bf7057124bdb5c3fe3 *inst/scripts/140_make_CCLE_correlation_matrix.R
6fcaf9063833cf8f0fd3234c820bdaef *inst/scripts/150_make_embryo_sce_Zhu.R
9e7faa1fd55bfbcf89183bd2d9b77e98 *inst/scripts/152_make_methylation_in_embryo.R
6f30ec98adfb0e258e8b4712206b801a *inst/scripts/154_make_mean_methylation_in_embryo.R
d1d2f323d003317318c0615ad715a6c9 *inst/scripts/160_make_embryo_sce_Petropoulos.R
78266dc908f8fb42cb7df232475a8b69 *inst/scripts/170_make_methylation_in_FGC.R
7c92f7a6aeec960b5da42f18e892e15d *inst/scripts/172_make_mean_methylation_in_FGC.R
ca39bc548cae40c4ec35074067c80dda *inst/scripts/180_make_hESC_data.R
9be7de413721b9aa729cb8be80b80e54 *inst/scripts/182_make_methylation_in_hESC.R
3556a8503c5c887e84ecd76fb6f417cf *inst/scripts/184_make_mean_methylation_in_hESC.R
e740f6eb1a5a26521f02abe4c8d20471 *inst/scripts/make_metadata.R
fa6b8ccfb9ca97b983e96b67d691f419 *inst/scripts/upload.R
c39d7294f882a8738cd15ac29c61cbb5 *man/CCLE_correlation_matrix.Rd
2d12be2681b08456021700889fae1bb0 *man/CCLE_data.Rd
fdc2697245efb6ffdadd4261e6a6cd6e *man/CT_genes.Rd
2079f2ca61d8575fa3fbf909e5af87c0 *man/CT_mean_methylation_in_tissues.Rd
0e19872f4f820ad3364a21c245c029cc *man/CT_methylation_in_tissues.Rd
fca2ed5e3aa009a7a39a0a3a07eabc34 *man/CTdata.Rd
280dc01d13346728e9bb479356bdcfef *man/DAC_treated_cells.Rd
a799df2d00345ada7cec763a2b235b5f *man/DAC_treated_cells_multimapping.Rd
54b13d270e5cc973c029ddaa6da562e0 *man/FGC_sce.Rd
c42fc3cb95bc3f087a116af466feb031 *man/GTEX_data.Rd
98361a8e8ccb9b18f7d88cefa46c512e *man/HPA_cell_type_specificities.Rd
e48cdba049972e57d3b7023e28dbc4d5 *man/TCGA_CT_methylation.Rd
8da172b992ade63e0eee7fd8b89fbb9e *man/TCGA_TPM.Rd
8b1f58b5c1f1e5658da5a45347790ded *man/TCGA_methylation.Rd
cded4e5bc4959471c833d27cfaee4625 *man/all_genes.Rd
3fcb7476453c879a43d27b41d1b28537 *man/embryo_sce_Petropoulos.Rd
ffd2986c20e702dd212a3301ac0a729f *man/embryo_sce_Zhu.Rd
e137d88ceef4643e9437682debbc4c5c *man/hESC_data.Rd
24ac45262db01159a40c22a360d83cac *man/makeTags.Rd
a84c4e42cd90e9aa77eea340213f9fc2 *man/mean_methylation_in_FGC.Rd
37954c30737f694b9ce006145c3a8706 *man/mean_methylation_in_embryo.Rd
6e039c9910f35e2efcd6a3b63456d117 *man/mean_methylation_in_hESC.Rd
d998d69cdf51885d1b575fdb3e8bb1bf *man/mean_methylation_in_tissues.Rd
e1e30af6e5b2a4ba05d80b73ae5e4e0b *man/methylation_in_FGC.Rd
1eadba537e54a8d0f882f4ca8ab99bda *man/methylation_in_embryo.Rd
d57203ef9f557fd92702143e96f8a06c *man/methylation_in_hESC.Rd
cbfce09df8d0aefe34bf176ccc78ba4c *man/methylation_in_tissues.Rd
6fe7ca051037245a71f95b349d0127d1 *man/normal_tissues_multimapping_data.Rd
76f48cb0138007bd15fc4e8be226ae39 *man/oocytes_sce.Rd
500a58a9ad73cabe71b1c5cdf95b58a3 *man/scRNAseq_HPA.Rd
e41bffcd34a076efe806082cb947e5ca *man/testis_sce.Rd
7aa66adf0de1d7a30db772e809b0c359 *tests/testthat.R
cf34be2e65a337926492c34658ba6000 *tests/testthat/test_makeTags.R
9ebf25684f2cb8f739338c0f5caffa50 *vignettes/CTdata.Rmd
d9adcc5bb42969f9390b658ff5fcedc7 *vignettes/Datasets.png
e850556a36547dcaa78ea056aff736ef *vignettes/Figure_CT.png
