8a398ee0e4b5caef2ced9829ad14ee83 *DESCRIPTION
549fdd95f087910eeb3eedfcbce5e024 *LICENSE
ad501d962f2c3221ecdb76f8dacd9f94 *NAMESPACE
22bd78594722852b44b4033c4d698d9c *NEWS.md
f5ea0577ea43db5a93778517d1c9dbf7 *R/RcppExports.R
cf6f16aec6d7e3d0ea66e2bb4ef2ff6d *R/bam_read.R
718e555b69e61545820103ef5a0fe292 *R/zzz.R
6cc809ad5bf0c77bc6d9972b9d7c02f5 *README.md
3d40049aff90ff4e607984e1e245e4c0 *build/vignette.rds
f070bd7acbf5cf63e828645cfcb2ad7b *inst/benchmarks/README.md
3da075a7175ad7c6b9bf97c3509696e2 *inst/benchmarks/bench_common.R
646f9bfdd7e87339be3996057301b493 *inst/benchmarks/download_atac_data.R
1bc040c94741a9d8e5037301ada1ffb7 *inst/benchmarks/merge_runs.R
c477edb0dfaf01e74b5d4ae755c1fa27 *inst/benchmarks/run_server_benchmark.R
80cfc0c45d154bba4529b418818473ea *inst/benchmarks/run_workflow_benchmark.R
f16dac556d4805beaed621e9a27fd893 *inst/benchmarks/samtools_reference.sh
23a2e89c6b88705f13d0b9b088e44112 *inst/benchmarks/select_encode_atac.R
c9696f980746b89d5170a7e02abacde4 *inst/doc/BamScale-intro.R
691fd32a3fc41dfb9fa1f9a3fd887ab3 *inst/doc/BamScale-intro.Rmd
cd7eaf84afc112fc79fc0eb87c6e7242 *inst/doc/BamScale-intro.html
529164be64a4e58235f1ae4492d215c4 *inst/doc/benchmark-results.R
1aa66abfb4a5a2cf02c083fda554f04f *inst/doc/benchmark-results.Rmd
0b946094fd4cab86e9e109e5773af7f9 *inst/doc/benchmark-results.html
c33f02e7da5044703aec1e4212e521a4 *man/BamScale-package.Rd
adf851bc150ae8447238294a008f397a *man/bam_count.Rd
42ce78284e6210c6a1151d89dc00a37f *man/bam_coverage.Rd
0b9696b80d83da8b3da17c07f2589807 *man/bam_coverage_bigwig.Rd
5e98a4d840545208d1daffc7e6ee91ae *man/bam_read.Rd
e825187fa1e09c4bdc77b4fa6ea41606 *man/decode_compact_qual.Rd
183214427fe4ee54bd0e504577a47e7d *man/decode_compact_seq.Rd
4baa8763cbdecf8004515bb6edff47b1 *man/decode_seqqual_compact.Rd
9cca03414cfeade573fe1c5e5e6200d8 *man/figures/logo.png
b9fcf2d2403da4b0953039c070bfe984 *man/fragment_sizes.Rd
a66fe3b42eca4af313e13fdee4fd5016 *man/mapq_dist.Rd
ad45041d29f819f18000bfbd85127700 *src/Makevars
ad45041d29f819f18000bfbd85127700 *src/Makevars.win
e548312269a65173a102874d6c8ba1d8 *src/RcppExports.cpp
ef0570e05d9a1f8198d65ed8eb16566f *src/bamscale.cpp
dae1104329b85e2a18f9153c7c76d5d9 *src/libBigWig/LICENSE
c9cf8a7d71d0feaf85c6e543e6bebb47 *src/libBigWig/bigWig.h
9d33ef810bf498a2e6aee230aac6de05 *src/libBigWig/bigWigIO.h
df49e3cb82e1e58266ba2c0d270f0e83 *src/libBigWig/bwCommon.h
e1fa180c6dfbad743c8c5474f69a7d1c *src/libBigWig/bwRead.c
ca303a0b8b3321703750a25f28a7f714 *src/libBigWig/bwStats.c
ebb4bf4442d71b3c8249beb20022b604 *src/libBigWig/bwValues.c
c9bedc075720b9b7c9ab41b65ed88b42 *src/libBigWig/bwValues.h
d17ee3755b41b9d8058e582089412a09 *src/libBigWig/bwWrite.c
843750a46020cd6a5ec0dffb5988f4d0 *src/libBigWig/io.c
8ec12f038ddeaa1be4eda4d5ad140b24 *src/xstringset_build.c
2484993f1f042869e30016c24766421b *tests/testthat.R
7645ee5ffbc221330c159995a56c1390 *tests/testthat/test-bamscale.R
691fd32a3fc41dfb9fa1f9a3fd887ab3 *vignettes/BamScale-intro.Rmd
1aa66abfb4a5a2cf02c083fda554f04f *vignettes/benchmark-results.Rmd
