Changes in version 0.99.9                        

  - Added @importClassesFrom SingleCellExperiment SingleCellExperiment
    so the imported class is used by the object-type check, resolving
    the "declared Import not used" note while keeping
    SingleCellExperiment in Imports.

                       Changes in version 0.99.8                        

  - Kept SingleCellExperiment in Imports (the package supports SCE
    objects); removed the unused importFrom so the package builds
    cleanly.

                       Changes in version 0.99.7                        

  - Moved SingleCellExperiment to Suggests and removed its unused
    importFrom (the class is checked via methods::is(), so the package
    is not needed at load time). Fixes the build failure from 0.99.6.

                       Changes in version 0.99.6                        

  - Moved SummarizedExperiment from Imports to Suggests (only used in
    tests).
  - Vignette: added an install chunk for the optional
    Seurat/SingleCellExperiment dependencies and removed the
    requireNamespace() guards and print() calls from the example chunks.

                       Changes in version 0.99.5                        

  - Vignette: the Seurat and SingleCellExperiment examples now run
    (removed eval = FALSE), using a small self-contained toy object, and
    show that the two object types give an identical classification.
    Also noted Seurat::as.SingleCellExperiment() for conversion.
  - remove_multiplets(): simplified the metadata-writing code using the
    x$<name> accessor, which works for both Seurat and
    SingleCellExperiment.
  - Started tracking changes in this NEWS file.

                       Changes in version 0.99.4                        

  - Removed the placeholder inst/CITATION file, since Bioconductor
    guidance is to include a CITATION only when there is an associated
    preprint or publication (will be restored with a DOI once
    published).
  - Added the Classification biocView and expanded the package
    Description.

                       Changes in version 0.99.1                        

  - remove_multiplets(): renamed from remove_multiplets_seurat(); now
    auto-detects whether the input is a Seurat or SingleCellExperiment
    object instead of requiring an object argument.
  - remove_multiplets(): remove = FALSE is now the default (annotate
    only); added a verbose argument and argument validation.
  - detect_multiplets(): added a verbose argument gating progress
    messages.
  - Added a package-level help page (?multipletR).
  - Vignette: switched to BiocStyle::html_document, added package
    hyperlinks (CRANpkg()/Biocpkg()/Githubpkg()), and added author/date.
  - Updated installation instructions to use BiocManager::install().
  - Added the fnd role and funding information to Authors@R.
  - Added unit tests for the plotting functions.

                       Changes in version 0.99.0                        

  - Initial Bioconductor submission.
  - detect_multiplets(): adaptive threshold detection of human-mouse
    multiplets from a 10x Cell Ranger GEM classification file, with
    diagnostic plots.
  - remove_multiplets_seurat(): annotate a Seurat object with the
    multiplet classification and optionally remove the detected
    multiplets.
  - Vignette illustrating the workflow on an example PDX dataset.