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rRDP

This is the development version of rRDP; for the stable release version, see rRDP.

Interface to the RDP Classifier


Bioconductor version: Development (3.20)

This package installs and interfaces the naive Bayesian classifier for 16S rRNA sequences developed by the Ribosomal Database Project (RDP). With this package the classifier trained with the standard training set can be used or a custom classifier can be trained.

Author: Michael Hahsler [aut, cre] , Nagar Anurag [aut]

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Citation (from within R, enter citation("rRDP")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rRDP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rRDP")
rRDP: Interface to the RDP Classifier HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Alignment, Bayesian, Classification, DataImport, Genetics, ImmunoOncology, Infrastructure, Microbiome, SequenceMatching, Sequencing, Software
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2 + file LICENSE
Depends Biostrings(>= 2.26.2)
Imports rJava, utils
System Requirements Java JDK 1.4 or higher
URL https://github.com/mhahsler/rRDP/
Bug Reports https://github.com/mhahsler/rRDP/issues
See More
Suggests rRDPData, knitr, rmarkdown
Linking To
Enhances
Depends On Me rRDPData
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rRDP_1.39.0.tar.gz
Windows Binary rRDP_1.39.0.zip (64-bit only)
macOS Binary (x86_64) rRDP_1.39.0.tgz
macOS Binary (arm64) rRDP_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rRDP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rRDP
Bioc Package Browser https://code.bioconductor.org/browse/rRDP/
Package Short Url https://bioconductor.org/packages/rRDP/
Package Downloads Report Download Stats