muscle
This is the development version of muscle; for the stable release version, see muscle.
Multiple Sequence Alignment with MUSCLE
Bioconductor version: Development (3.23)
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.
Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>
Citation (from within R, enter
citation("muscle")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("muscle")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software |
| Version | 3.53.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | Unlimited |
| Depends | Biostrings |
| Imports | |
| System Requirements | |
| URL | http://www.drive5.com/muscle/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/muscle |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/muscle |
| Package Short Url | https://bioconductor.org/packages/muscle/ |
| Package Downloads Report | Download Stats |