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genomeIntervals

This is the development version of genomeIntervals; for the stable release version, see genomeIntervals.

Operations on genomic intervals


Bioconductor version: Development (3.20)

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at in.tum.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at in.tum.de>

Citation (from within R, enter citation("genomeIntervals")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("genomeIntervals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")
Overview of the genomeIntervals package. PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Genetics, Infrastructure, Software
Version 1.61.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
System Requirements
URL
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Suggests
Linking To
Enhances
Depends On Me girafe
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genomeIntervals_1.61.0.tar.gz
Windows Binary genomeIntervals_1.61.0.zip (64-bit only)
macOS Binary (x86_64) genomeIntervals_1.61.0.tgz
macOS Binary (arm64) genomeIntervals_1.61.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genomeIntervals
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genomeIntervals
Bioc Package Browser https://code.bioconductor.org/browse/genomeIntervals/
Package Short Url https://bioconductor.org/packages/genomeIntervals/
Package Downloads Report Download Stats