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This is the development version of cnvGSA; for the stable release version, see cnvGSA.

Gene Set Analysis of (Rare) Copy Number Variants

Bioconductor version: Development (3.20)

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at>, Robert Ziman <rziman at>; packaged by Joseph Lugo <joseph.r.lugo at>

Maintainer: Joseph Lugo <joseph.r.lugo at>

Citation (from within R, enter citation("cnvGSA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

cnvGSA - Gene-Set Analysis of Rare Copy Number Variants PDF
cnvGSAUsersGuide.pdf PDF
Reference Manual PDF


biocViews MultipleComparison, Software
Version 1.49.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License LGPL
Depends brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
System Requirements
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Suggests cnvGSAdata,
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Depends On Me cnvGSAdata
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Follow Installation instructions to use this package in your R session.

Source Package cnvGSA_1.49.0.tar.gz
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macOS Binary (x86_64) cnvGSA_1.49.0.tgz
macOS Binary (arm64) cnvGSA_1.49.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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