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This is the development version of SELEX; for the stable release version, see SELEX.

Functions for analyzing SELEX-seq data

Bioconductor version: Development (3.20)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at>

Citation (from within R, enter citation("SELEX")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Motif Discovery with SELEX-seq PDF R Script
Reference Manual PDF


biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.37.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>=2)
Depends rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports stats, utils
System Requirements Java (>= 1.5)
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Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.37.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) SELEX_1.37.0.tgz
macOS Binary (arm64) SELEX_1.37.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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