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ROTS

This is the development version of ROTS; for the stable release version, see ROTS.

Reproducibility-Optimized Test Statistic


Bioconductor version: Development (3.20)

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Citation (from within R, enter citation("ROTS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")
ROTS: Reproducibility Optimized Test Statistic PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software
Version 1.33.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2)
Depends R (>= 3.3)
Imports Rcpp, stats, Biobase, methods
System Requirements
URL
See More
Suggests testthat
Linking To Rcpp
Enhances
Depends On Me
Imports Me PECA, RolDE
Suggests Me wrProteo
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ROTS_1.33.0.tar.gz
Windows Binary ROTS_1.33.0.zip (64-bit only)
macOS Binary (x86_64) ROTS_1.33.0.tgz
macOS Binary (arm64) ROTS_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ROTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ROTS
Bioc Package Browser https://code.bioconductor.org/browse/ROTS/
Package Short Url https://bioconductor.org/packages/ROTS/
Package Downloads Report Download Stats