OVESEG
This is the development version of OVESEG; for the stable release version, see OVESEG.
OVESEG-test to detect tissue/cell-specific markers
Bioconductor version: Development (3.20)
An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.
Author: Lulu Chen <luluchen at vt.edu>
Maintainer: Lulu Chen <luluchen at vt.edu>
citation("OVESEG")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("OVESEG")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OVESEG")
OVESEG User Manual | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBiology, GeneExpression, MultipleComparison, Software |
Version | 1.21.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-2 |
Depends | R (>= 3.6) |
Imports | stats, utils, methods, BiocParallel, SummarizedExperiment, limma, fdrtool, Rcpp |
System Requirements | C++11 |
URL | |
Bug Reports | https://github.com/Lululuella/OVESEG |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra, grid, reshape2, scales |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | OVESEG_1.21.0.tar.gz |
Windows Binary | OVESEG_1.21.0.zip (64-bit only) |
macOS Binary (x86_64) | OVESEG_1.21.0.tgz |
macOS Binary (arm64) | OVESEG_1.21.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/OVESEG |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OVESEG |
Bioc Package Browser | https://code.bioconductor.org/browse/OVESEG/ |
Package Short Url | https://bioconductor.org/packages/OVESEG/ |
Package Downloads Report | Download Stats |