FitHiC
This is the development version of FitHiC; for the stable release version, see FitHiC.
Confidence estimation for intra-chromosomal contact maps
Bioconductor version: Development (3.20)
Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Author: Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)
Maintainer: Ruyu Tan <rut003 at ucsd.edu>
citation("FitHiC")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("FitHiC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FitHiC")
Vignette Title | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DNA3DStructure, Software |
Version | 1.31.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | GPL (>= 2) |
Depends | |
Imports | data.table, fdrtool, grDevices, graphics, Rcpp, stats, utils |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | FitHiC_1.31.0.tar.gz |
Windows Binary | FitHiC_1.31.0.zip |
macOS Binary (x86_64) | FitHiC_1.31.0.tgz |
macOS Binary (arm64) | FitHiC_1.31.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/FitHiC |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FitHiC |
Bioc Package Browser | https://code.bioconductor.org/browse/FitHiC/ |
Package Short Url | https://bioconductor.org/packages/FitHiC/ |
Package Downloads Report | Download Stats |