Registration Open for Bioc2024
Early registration discount pricing ends May 31!


This is the development version of CytoPipelineGUI; for the stable release version, see CytoPipelineGUI.

GUI's for visualization of flow cytometry data analysis pipelines

Bioconductor version: Development (3.20)

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] , Laurent Gatto [aut] , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at>

Citation (from within R, enter citation("CytoPipelineGUI")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline HTML R Script
Demonstration of the CytoPipeline R package suite functionalities HTML R Script
Reference Manual PDF


biocViews FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep
Version 1.3.0
In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)
License GPL-3
Depends R (>= 4.3), CytoPipeline
Imports shiny, plotly, ggplot2, flowCore
System Requirements
Bug Reports
See More
Suggests testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CytoPipelineGUI_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64) CytoPipelineGUI_1.3.0.tgz
macOS Binary (arm64) CytoPipelineGUI_1.3.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats