ChIPComp
This is the development version of ChIPComp; for the stable release version, see ChIPComp.
Quantitative comparison of multiple ChIP-seq datasets
Bioconductor version: Development (3.20)
ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.
Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang
Maintainer: Li Chen <li.chen at emory.edu>
Citation (from within R, enter
citation("ChIPComp")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ChIPComp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPComp")
ChIPComp | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription |
Version | 1.35.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
License | GPL |
Depends | R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors |
Imports | Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics |
System Requirements | |
URL |
See More
Suggests | BiocStyle, RUnit |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ChIPComp_1.35.0.tar.gz |
Windows Binary | ChIPComp_1.35.0.zip |
macOS Binary (x86_64) | ChIPComp_1.35.0.tgz |
macOS Binary (arm64) | ChIPComp_1.35.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ChIPComp |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPComp |
Bioc Package Browser | https://code.bioconductor.org/browse/ChIPComp/ |
Package Short Url | https://bioconductor.org/packages/ChIPComp/ |
Package Downloads Report | Download Stats |