Package: seqPattern
Title: Visualising oligonucleotide patterns and motif occurrences
        across a set of sorted sequences
Version: 1.45.0
Date: 08-05-2015
Author: Vanja Haberle <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>
Imports: Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
Depends: methods, R (>= 2.15.0)
Suggests: BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics,
        BiocStyle
Enhances: parallel
Description: Visualising oligonucleotide patterns and sequence motifs
        occurrences across a large set of sequences centred at a common
        reference point and sorted by a user defined feature.
License: GPL-3
biocViews: Visualization, SequenceMatching
Collate: MotifScanningFunctions.R MotifScanningMethods.R
        PatternOccurrenceFunctions.R PatternOccurrenceMethods.R
        PlottingFunctions.R PlottingMethods.R
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:40:25 UTC
RemoteUrl: https://github.com/bioc/seqPattern
RemoteRef: HEAD
RemoteSha: 84dc096f6a1b438d0996756f3d23f269bec1bb17
NeedsCompilation: no
Packaged: 2026-05-30 09:52:06 UTC; root
Built: R 4.6.0; ; 2026-05-30 10:36:17 UTC; windows
