# Generated by roxygen2: do not edit by hand

S3method(plot,sccomp_tbl)
S3method(print,sccomp_tbl)
S3method(sccomp_calculate_residuals,sccomp_tbl)
S3method(sccomp_estimate,DFrame)
S3method(sccomp_estimate,Seurat)
S3method(sccomp_estimate,SingleCellExperiment)
S3method(sccomp_estimate,data.frame)
S3method(sccomp_predict,sccomp_tbl)
S3method(sccomp_proportional_fold_change,sccomp_tbl)
S3method(sccomp_remove_outliers,sccomp_tbl)
S3method(sccomp_remove_unwanted_effects,sccomp_tbl)
S3method(sccomp_replicate,sccomp_tbl)
S3method(sccomp_test,sccomp_tbl)
S3method(simulate_data,tbl)
export(clear_stan_model_cache)
export(plot_1D_intervals)
export(plot_2D_intervals)
export(sccomp_boxplot)
export(sccomp_calculate_residuals)
export(sccomp_estimate)
export(sccomp_predict)
export(sccomp_proportional_fold_change)
export(sccomp_remove_outliers)
export(sccomp_remove_unwanted_effects)
export(sccomp_remove_unwanted_variation)
export(sccomp_replicate)
export(sccomp_stan_models_cache_dir)
export(sccomp_test)
export(sccomp_theme)
export(simulate_data)
import(dplyr)
import(ggplot2)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,counts)
importFrom(crayon,red)
importFrom(dplyr,across)
importFrom(dplyr,add_count)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,c_across)
importFrom(dplyr,count)
importFrom(dplyr,cummean)
importFrom(dplyr,distinct)
importFrom(dplyr,distinct_at)
importFrom(dplyr,enquo)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,matches)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,where)
importFrom(dplyr,with_groups)
importFrom(forcats,fct_relevel)
importFrom(forcats,fct_reorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggrepel,geom_text_repel)
importFrom(glue,glue)
importFrom(instantiate,stan_cmdstan_exists)
importFrom(instantiate,stan_package_compile)
importFrom(instantiate,stan_package_model)
importFrom(lifecycle,deprecate_warn)
importFrom(lifecycle,is_present)
importFrom(magrittr,"%$%")
importFrom(magrittr,divide_by)
importFrom(magrittr,equals)
importFrom(magrittr,extract2)
importFrom(magrittr,multiply_by)
importFrom(magrittr,not)
importFrom(magrittr,subtract)
importFrom(parallel,detectCores)
importFrom(patchwork,wrap_plots)
importFrom(purrr,as_mapper)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map2_dfc)
importFrom(purrr,map2_lgl)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap)
importFrom(purrr,reduce)
importFrom(purrr,when)
importFrom(readr,read_file)
importFrom(readr,type_convert)
importFrom(readr,write_file)
importFrom(rlang,":=")
importFrom(rlang,abort)
importFrom(rlang,check_installed)
importFrom(rlang,enquo)
importFrom(rlang,ensym)
importFrom(rlang,inform)
importFrom(rlang,is_symbolic)
importFrom(rlang,quo_get_expr)
importFrom(rlang,quo_is_null)
importFrom(rlang,quo_is_symbolic)
importFrom(rlang,quo_name)
importFrom(rlang,quo_squash)
importFrom(rlang,set_names)
importFrom(scales,trans_new)
importFrom(stats,C)
importFrom(stats,as.formula)
importFrom(stats,model.matrix)
importFrom(stats,quantile)
importFrom(stats,terms)
importFrom(stringr,str_detect)
importFrom(stringr,str_remove)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_subset)
importFrom(stringr,str_trim)
importFrom(tibble,add_column)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,deframe)
importFrom(tibble,enframe)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,complete)
importFrom(tidyr,crossing)
importFrom(tidyr,drop_na)
importFrom(tidyr,expand_grid)
importFrom(tidyr,nest)
importFrom(tidyr,nesting)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(tidyr,unnest)
importFrom(tidyselect,all_of)
importFrom(tidyselect,last_col)
importFrom(utils,data)
