Type: Package
Package: rprimer
Title: Design Degenerate Oligos from a Multiple DNA Sequence Alignment
Version: 1.17.0
Description: Functions, workflow, and a Shiny application for
        visualizing sequence conservation and designing degenerate
        primers, probes, and (RT)-(q/d)PCR assays from a multiple DNA
        sequence alignment. The results can be presented in data frame
        format and visualized as dashboard-like plots. For more
        information, please see the package vignette.
Authors@R: 
    person(given = "Sofia",
           family = "Persson",
           role = c("aut", "cre"),
           email = "sofiapersson27@gmail.com",
           comment = c(ORCID = "0000-0003-2611-3030"))
License: GPL-3
URL: https://github.com/sofpn/rprimer
BugReports: https://github.com/sofpn/rprimer/issues
Depends: R (>= 4.1)
Imports: Biostrings, bslib, DT, ggplot2, IRanges, mathjaxr, methods,
        patchwork, reshape2, S4Vectors, shiny, shinycssloaders,
        shinyFeedback
Suggests: BiocStyle, covr, kableExtra, knitr, rmarkdown, styler,
        testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.1.2
RdMacros: mathjaxr
biocViews: Alignment, ddPCR, Coverage, MultipleSequenceAlignment,
        SequenceMatching, qPCR
biocType: Software
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:31 UTC
RemoteUrl: https://github.com/bioc/rprimer
RemoteRef: HEAD
RemoteSha: beb25279f6f52c4ffe52a9b5f1469933f8055ea7
NeedsCompilation: no
Packaged: 2026-05-23 09:44:53 UTC; root
Author: Sofia Persson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2611-3030>)
Maintainer: Sofia Persson <sofiapersson27@gmail.com>
Built: R 4.6.0; ; 2026-05-23 09:46:23 UTC; windows
