# Methylclock - DNA methylation-based clocks

## Documentation for package ‘methylclock’ version 1.19.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

checkClocks | Check wheter input data contains the required CpGs for the implemented clocks.
checkClocksGA | Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age.
commonClockCpgs | Get common CpGs
DNAmAge | DNAm age estimation using different DNA methylation clocks.
DNAmGA | Gestational DNAm age estimation using different DNA methylation clocks.
getCellTypeReference | Get cell type reference
load_DNAmGA_Clocks_data | Loads DNAmGA clock data from methylclockData
load_DNAm_Clocks_data | Loads DNAm clock data from methylclockData
meffilEstimateCellCountsFromBetas | Estimate cell counts for a beta matrix from a reference
meffilListCellTypeReferences | List of available cell type references
methylclock | methylclock
plotCorClocks | Plot correlation among DNAm clockx
plotDNAmAge | Plot DNAm age estimation vs chronological age.
progress_data | PROGRESS cohor data
progress_vars | PROGRESS cohort variables