Abundance and Compositional Based Binning of Metagenomes
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Documentation for package ‘metabinR’ version 2.1.1
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| abundance_based_binning | Abundance based binning on metagenomic samples |
| algorithm | Accessors for MetabinResult |
| algorithm-method | Accessors for MetabinResult |
| ambiguous_reads | Find reads with close competing bins |
| as.data.frame-method | Convert a MetabinResult to a 'data.frame' |
| assignments | Accessors for MetabinResult |
| assignments-method | Accessors for MetabinResult |
| bin_summary | Summarize the bins in a metabinR result |
| composition_based_binning | Composition based binning on metagenomic samples |
| evaluate_bins | Evaluate read-level bin assignments against known origins |
| hierarchical_binning | Hierarchical (ABxCB) binning on metagenomic samples |
| MetabinResult | MetabinResult: binning result container |
| MetabinResult-accessors | Accessors for MetabinResult |
| MetabinResult-class | MetabinResult: binning result container |
| metabinR_jvm_options | JVM options used when metabinR loads |
| nClusters | Accessors for MetabinResult |
| nClusters-method | Accessors for MetabinResult |
| parameters | Accessors for MetabinResult |
| parameters-method | Accessors for MetabinResult |
| show-method | MetabinResult: binning result container |