Package: martini
Type: Package
Title: GWAS Incorporating Networks
Version: 1.31.0
Authors@R: c(person("Hector", "Climente-Gonzalez", 
                    email = "hector.climente@a.riken.jp",
                    role = c("aut", "cre"),
                    comment = c(ORCID = "0000-0002-3030-7471")),
             person("Chloe-Agathe", "Azencott", 
                    role = "aut",
                    comment = c(ORCID = "0000-0003-1003-301X")))
Description: martini deals with the low power inherent to GWAS studies
        by using prior knowledge represented as a network. SNPs are the
        vertices of the network, and the edges represent biological
        relationships between them (genomic adjacency, belonging to the
        same gene, physical interaction between protein products). The
        network is scanned using SConES, which looks for groups of SNPs
        maximally associated with the phenotype, that form a close
        subnetwork.
License: GPL-3
LazyData: TRUE
Imports: igraph (>= 1.0.1), Matrix, memoise (>= 2.0.0), methods (>=
        3.3.2), Rcpp (>= 0.12.8), snpStats (>= 1.20.0), stats, utils,
Suggests: biomaRt (>= 2.34.1), circlize (>= 0.4.11), STRINGdb (>=
        2.2.0), httr (>= 1.2.1), IRanges (>= 2.8.2), S4Vectors (>=
        0.12.2), knitr, testthat, readr, rmarkdown
Depends: R (>= 4.0)
LinkingTo: Rcpp, RcppEigen (>= 0.3.3.5.0)
RoxygenNote: 7.2.3
Encoding: UTF-8
biocViews: Software, GenomeWideAssociation, SNP, GeneticVariability,
        Genetics, FeatureExtraction, GraphAndNetwork, Network
VignetteBuilder: knitr
URL: https://github.com/hclimente/martini
BugReports: https://github.com/hclimente/martini/issues
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:43:27 UTC
RemoteUrl: https://github.com/bioc/martini
RemoteRef: HEAD
RemoteSha: 59da88318e66bd16366b58b512b58c21de57133b
NeedsCompilation: yes
Packaged: 2026-02-02 09:49:38 UTC; root
Author: Hector Climente-Gonzalez [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3030-7471>),
  Chloe-Agathe Azencott [aut] (ORCID:
    <https://orcid.org/0000-0003-1003-301X>)
Maintainer: Hector Climente-Gonzalez <hector.climente@a.riken.jp>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-02-02 09:51:15 UTC; windows
Archs: x64
