Package: magrene
Title: Motif Analysis In Gene Regulatory Networks
Version: 1.15.0
Date: 2022-01-21
Authors@R: 
    c(
    person(given = "Fabrício",
           family = "Almeida-Silva",
           role = c("aut", "cre"),
           email = "fabricio_almeidasilva@hotmail.com",
           comment = c(ORCID = "0000-0002-5314-2964")),
    person(given = "Yves",
           family = "Van de Peer",
           role = "aut",
           comment = c(ORCID = "0000-0003-4327-3730"))
    )
Description: magrene allows the identification and analysis of graph
        motifs in (duplicated) gene regulatory networks (GRNs),
        including lambda, V, PPI V, delta, and bifan motifs. GRNs can
        be tested for motif enrichment by comparing motif frequencies
        to a null distribution generated from degree-preserving
        simulated GRNs. Motif frequencies can be analyzed in the
        context of gene duplications to explore the impact of
        small-scale and whole-genome duplications on gene regulatory
        networks. Finally, users can calculate interaction similarity
        for gene pairs based on the Sorensen-Dice similarity index.
License: GPL-3
URL: https://github.com/almeidasilvaf/magrene
BugReports: https://support.bioconductor.org/t/magrene
biocViews: Software, MotifDiscovery, NetworkEnrichment, SystemsBiology,
        GraphAndNetwork
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
Imports: utils, stats, BiocParallel
Suggests: BiocStyle, covr, knitr, rmarkdown, ggplot2, sessioninfo,
        testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.2.0)
LazyData: false
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:59:07 UTC
RemoteUrl: https://github.com/bioc/magrene
RemoteRef: HEAD
RemoteSha: b2761b420710edfe5cee2a0f1eb543ba3efc3803
NeedsCompilation: no
Packaged: 2026-05-16 09:20:39 UTC; root
Author: Fabrício Almeida-Silva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5314-2964>),
  Yves Van de Peer [aut] (ORCID: <https://orcid.org/0000-0003-4327-3730>)
Maintainer: Fabrício Almeida-Silva <fabricio_almeidasilva@hotmail.com>
Built: R 4.6.0; ; 2026-05-16 09:22:07 UTC; windows
