Package: hipathia
Title: HiPathia: High-throughput Pathway Analysis
Version: 3.13.0
Authors@R: c(person("Marta R.", "Hidalgo", email = "marta.hidalgo@outlook.es", role = c("aut", "cre")),
	     person("José", "Carbonell-Caballero", role = c("ctb")),
	     person("Francisco", "Salavert", role = c("ctb")),
	     person("Alicia", "Amadoz", role = c("ctb")),
	     person("Çankut", "Cubuk", role = c("ctb")),
	     person("Joaquin", "Dopazo", role = c("ctb")))
Description: Hipathia is a method for the computation of signal
        transduction along signaling pathways from transcriptomic data.
        The method is based on an iterative algorithm which is able to
        compute the signal intensity passing through the nodes of a
        network by taking into account the level of expression of each
        gene and the intensity of the signal arriving to it. It also
        provides a new approach to functional analysis allowing to
        compute the signal arriving to the functions annotated to each
        pathway.
Depends: R (>= 4.1), igraph (>= 1.0.1), zen4R(>= 0.10.4),
        MultiAssayExperiment(>= 1.4.9), SummarizedExperiment(>= 1.8.1)
License: GPL-2
Encoding: UTF-8
Imports: coin, stats, limma, grDevices, utils, graphics,
        preprocessCore, servr, DelayedArray, matrixStats, methods,
        S4Vectors, ggplot2, ggpubr, dplyr, tibble, visNetwork,
        reshape2, MetBrewer
RoxygenNote: 7.3.3
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Pathways, GraphAndNetwork, GeneExpression, GeneSignaling, GO
LazyData: true
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libsecret-1-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:49 UTC
RemoteUrl: https://github.com/bioc/hipathia
RemoteRef: HEAD
RemoteSha: 88814b548e2b16ce6cb4af96cc9a173e2e1eb257
NeedsCompilation: no
Packaged: 2026-05-30 08:02:45 UTC; root
Author: Marta R. Hidalgo [aut, cre],
  José Carbonell-Caballero [ctb],
  Francisco Salavert [ctb],
  Alicia Amadoz [ctb],
  Çankut Cubuk [ctb],
  Joaquin Dopazo [ctb]
Maintainer: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Built: R 4.6.0; ; 2026-05-30 08:04:57 UTC; windows
