# Easy single cell analysis platform for enrichment

## Documentation for package ‘escape’ version 2.9.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

densityEnrichment | Visualize Mean Density Ranking of Genes Across Gene Sets
enrichIt | Flexible GSEA for Precomputed Gene Lists
enrichItPlot | Adaptive Visualisation of enrichIt Results
escape.gene.sets | Built-In Gene Sets for escape
escape.matrix | Calculate Single-Cell Gene-Set Enrichment Scores
getGeneSets | Get a Collection of Gene Sets from MSigDB
geyserEnrichment | Visualize Enrichment Distributions Using Geyser Plots
gseaEnrichment | Classical GSEA-style Running-Enrichment Plot
heatmapEnrichment | Visualize Enrichment Value Summaries Using Heatmaps
pcaEnrichment | Visualize the PCA of Enrichment Values
performNormalization | Perform Normalization on Enrichment Data
performPCA | Perform Principal Component Analysis on Enrichment Data
ridgeEnrichment | Visualize Enrichment Distributions Using Ridge Plots
runEscape | Calculate Enrichment Scores Using Seurat or SingleCellExperiment Objects
scatterEnrichment | Plot 2D Enrichment Distributions With Density or Hexplots
splitEnrichment | Plot Enrichment Distributions Using Split or Dodged Violin Plots