# Generated by roxygen2: do not edit by hand

export(addCentrality)
export(buildDiffGraph)
export(buildGraph)
export(calculateJaccardSimilarity)
export(enrichPlot)
export(findDifferentialActivity)
export(findPartners)
export(getSigGenes)
export(normalizeCentrality)
export(permuteGraph)
export(plotActivityDim)
export(plotActivityViolin)
export(plotBubble)
export(plotDiffNetwork)
export(plotEpiregulonNetwork)
export(plotGseaNetwork)
export(plotHeatmapActivity)
export(plotHeatmapRegulon)
export(rankTfs)
export(regulonEnrich)
import(SummarizedExperiment)
import(ggplot2)
import(igraph)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,anno_mark)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(Matrix,colSums)
importFrom(Matrix,diff)
importFrom(Matrix,t)
importFrom(S4Vectors,split)
importFrom(SummarizedExperiment,colData)
importFrom(circlize,colorRamp2)
importFrom(clusterProfiler,enricher)
importFrom(epiregulon,findMarkersSimple)
importFrom(ggraph,create_layout)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggraph,theme_graph)
importFrom(methods,is)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,wrap_plots)
importFrom(scales,squish)
importFrom(scater,plotReducedDim)
importFrom(stats,aggregate)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(stats,reformulate)
importFrom(stats,reshape)
importFrom(stats,setNames)
importFrom(utils,head)
