# Package to Draw Protein Schematics from Uniprot API output

## Documentation for package ‘drawProteins’ version 1.33.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

drawProteins | drawProteins.
draw_canvas | Create ggplot2 object with protein chains from feature database
draw_chains | Create ggplot2 object with protein chains from feature database
draw_domains | Add protein domains to ggplot2 object.
draw_folding | Add regions to ggplot object: alpha-helixes, beta-strands and turns.
draw_motif | Add protein motifs sites to ggplot2 object.
draw_phospho | Add protein phosphorylation sites to ggplot2 object.
draw_recept_dom | Add receptor domains to ggplot2 object.
draw_regions | Add protein region sites to ggplot2 object.
draw_repeat | Add protein repeats sites to ggplot2 object.
extract_feat_acc | Create a dataframe of protein features from JSON object (List of 6)
extract_names | Extract protein names into a list
extract_transcripts | Create a new dataframe of protein features from dataframe with multiple transcripts separated so that each transcript is drawn separtely with only the appropriate features.
feature_to_dataframe | Create a dataframe of protein features from JSON object
five_rel_data | Dataframe features of 5 human NFkappaB proteins Uniprot on 1 Nov 2017
five_rel_list | Features of five human Rel A proteins
get_features | GET features of protein(s) from UniProt API
parse_gff | Reformat file or url in gff format to allow to draw
phospho_site_info | Create a dataframe of protein features from JSON object
protein_json | Uniprot infor human Rel A protein in JSON format
rel_A_features | Features of human Rel A protein
rel_json | Human Rel A protein features in JSON format
tnfs_data | Dataframe features of 2 human TNF receptors from Uniprot on 3 Jan 2018