Type: Package
Package: chevreulProcess
Title: Tools for managing SingleCellExperiment objects as projects
Version: 1.5.0
Authors@R: c(
    person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
    person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
    )
Description: Tools for analyzing SingleCellExperiment objects as
        projects. for input into the chevreulShiny app downstream.
        Includes functions for analysis of single cell RNA sequencing
        data. Supported by NIH grants R01CA137124 and R01EY026661 to
        David Cobrinik.
License: MIT + file LICENSE
URL: https://github.com/whtns/chevreulProcess,
        https://whtns.github.io/chevreulProcess/
Date: 2024-03-24
BugReports: https://github.com/cobriniklab/chevreulProcess/issues
Depends: R (>= 4.5.0), SingleCellExperiment, scater
Imports: batchelor, bluster, circlize, cluster, DBI, dplyr,
        EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue,
        megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle,
        stringr, tibble, tidyr, tidyselect, utils
Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Coverage, RNASeq, Sequencing, Visualization, GeneExpression,
        Transcription, SingleCell, Transcriptomics, Normalization,
        Preprocessing, QualityControl, DimensionReduction, DataImport
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev git libglpk-dev make
        libharfbuzz-dev libbz2-dev libgit2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:04:23 UTC
RemoteUrl: https://github.com/bioc/chevreulProcess
RemoteRef: HEAD
RemoteSha: 3109745e58c575796c20c3c0fb3b387c4183aca0
NeedsCompilation: no
Packaged: 2026-05-15 10:04:15 UTC; root
Author: Kevin Stachelek [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2085-695X>),
  Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek@gmail.com>
Built: R 4.6.0; ; 2026-05-15 10:08:03 UTC; windows
