# Analysis of SUrvival and RIsk prediction in patients based on gene signatures

## Documentation for package ‘asuri’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

asuri | asuri: *A*nalysis of disease *SU*rvival and patient *RI*sk prediction based on gene signatures
ex_genePheno | ex_genePheno
ex_patientRisk | ex_patientRisk
ex_predictPatientRisk | ex_predictPatientRisk
ex_prefilterSAM | ex_prefilterSAM
genePheno | Identify Predictive Genes for a Phenotype
geneSurv | Kaplan-Meier Survival Analysis Based on Gene Expression or Risk Score
patientRisk | patientRisk
plotBetas | Plot the ordered beta values for patientRisk()
plotBoxplot | Plot a Boxplot for geneSurv()
plotKM | Plot the KM curves for geneSurv() and patientRisk()
plotLambda | Plot a lambda distribution for patientRisk()
plotLogRank | Plot the logrank p-value for each patient splitting for patientRisk()
plotProbClass | Plot a class probability distribution for geneSurv()
plotSigmoid | Plot the ordered risk distribution for patientRisk()
predict_PatientRisk | Predict Patient Risk Based on Gene Expression Data
predict_SurvCurve | Predict Survival Curve for a Test Patient Using Cox Model Predictions
prefilterSAM | Pre-filter Genes using SAM (Significance Analysis of Microarrays)
seBRCA | Example SummarizedExperiment object