Import Visium data from the 10X Space Ranger pipeline

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Documentation for package ‘VisiumIO’ version 1.7.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.TENxGeoJSON	Import 10X Genomics GeoJSON files
.TENxMappingParquet	Represent and import Parquet data from 10X Genomics
.TENxParquet	Represent and import Parquet data from 10X Genomics
.TENxSpatialCSV	Represent and import spatial CSV data from 10X Genomics
.TENxSpatialList	A class to represent and import spatial Visium data
.TENxSpatialParquet	Represent and import spatial Parquet data from 10X Genomics
.TENxVisium	A class to represent and import a single Visium Sample
.TENxVisiumHD	A class to represent and import multiple Visium HD samples
.TENxVisiumList	A class to represent and import multiple Visium samples
compareBarcodes	Compare barcodes between raw and filtered data
import-method	Import 10X Genomics GeoJSON files
import-method	Represent and import Parquet data from 10X Genomics
import-method	Represent and import spatial CSV data from 10X Genomics
import-method	A class to represent and import spatial Visium data
import-method	Represent and import spatial Parquet data from 10X Genomics
import-method	A class to represent and import a single Visium Sample
import-method	A class to represent and import multiple Visium HD samples
import-method	A class to represent and import multiple Visium samples
st_invert_y	Flip the Y-axis of cell or nucleus segmentations to align with H&E image
TENxGeoJSON	Import 10X Genomics GeoJSON files
TENxGeoJSON-class	Import 10X Genomics GeoJSON files
TENxMappingParquet	Represent and import Parquet data from 10X Genomics
TENxMappingParquet-class	Represent and import Parquet data from 10X Genomics
TENxParquet	Represent and import Parquet data from 10X Genomics
TENxParquet-class	Represent and import Parquet data from 10X Genomics
TENxSpatialCSV	Represent and import spatial CSV data from 10X Genomics
TENxSpatialCSV-class	Represent and import spatial CSV data from 10X Genomics
TENxSpatialList	A class to represent and import spatial Visium data
TENxSpatialList-class	A class to represent and import spatial Visium data
TENxSpatialParquet	Represent and import spatial Parquet data from 10X Genomics
TENxSpatialParquet-class	Represent and import spatial Parquet data from 10X Genomics
TENxVisium	A class to represent and import a single Visium Sample
TENxVisium-class	A class to represent and import a single Visium Sample
TENxVisiumHD	A class to represent and import multiple Visium HD samples
TENxVisiumHD-class	A class to represent and import multiple Visium HD samples
TENxVisiumList	A class to represent and import multiple Visium samples
TENxVisiumList-class	A class to represent and import multiple Visium samples