# Rapid Integration of Term Annotation and Network resources

## Documentation for package ‘RITAN’ version 1.37.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

as.graph | as.graph
check_any_net_input | check_any_net_input
check_net_input | check_net_input
cov_undirected | cov_undirected function to show the un-directed coverabe between two nodes lists from two networks
enrichment_symbols | enrichment_symbols
geneset_overlap | geneset_overlap
icon_single_within | icon_single_within interconnectivity score within a network
icon_test | icon_test
load_all_protein_coding_symbols | load_all_protein_coding_symbols
load_geneset_symbols | load_geneset_symbols
network_overlap | network_overlap
plot.term_enrichment | plot.term_enrichment
plot.term_enrichment_by_subset | plot.term_enrichment_by_subset
readGMT | readGMT
readSIF | readSIF
resource_reduce | resource_reduce Merge terms across resources to reduce the number of redundant and semi-redundant terms
show_active_genesets_hist | show_active_genesets_hist
summary.term_enrichment | summary.term_enrichment
summary.term_enrichment_by_subset | summary.term_enrichment_by_subset
term_enrichment | term_enrichment
term_enrichment_by_subset | term_enrichment_by_subset
vac1.day0vs31.de.genes | This dataset is included as an example in the package:
vac1.day0vs56.de.genes | This dataset is included as an example in the package:
vac2.day0vs31.de.genes | This dataset is included as an example in the package:
vac2.day0vs56.de.genes | This dataset is included as an example in the package:
writeGMT | writeGMT
write_simple_table | write_simple_table