# Longitudinal system suitability monitoring and quality control for proteomic experiments

## Documentation for package ‘MSstatsQC’ version 2.31.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ChangePointEstimator | A function to identify the time of a change in the mean or variability of a metric
CUSUMChart | A function to create cumulative sum charts for mean (CUSUMm) and cumulative sum charts for variability (CUSUMv) control charts
DataProcess | A data processing function
DecisionMap | A function to create heatmaps to compare performance with user defined performance criteria
MissingDataMap | A function to summarize missing values
MSnbaseToMSstatsQC | A function to convert MSnbase files to MSstatsQC format
MSstatsQC.ML.deployR | A function to test random forest classifiers for QC data
MSstatsQC.ML.sim.size.detectR | A function to train random forest classifiers for QC data
MSstatsQC.ML.trainR | A function to train random forest classifiers for QC data
mzQCToMSstatsQC | A function to convert mzQC files to MSstatsQC format
QCloudDDA | DDA QC data from QCloud System
QCloudSRM | SRM QC data from QCloud System
QuiCDIA | DIA iRT data from QuiC System
RadarPlot | A function to create radar plot to aggregate results from X and mR charts or CUSUMm and CUSUMv charts.
RemoveMissing | A data processing function for removing missing values
RiverPlot | A function to create river plot to aggregate results from X and mR charts or CUSUMm and CUSUMv charts.
S9Site54 | CPTAC study 9.1 site 54 dataset
XmRChart | A function to construct individual (X) and moving range (mR) control charts