Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in
        Microbiome Studies
Version: 2.1.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of
        microbiome cohorts. It has function interfaces for: a)
        covariate-controlled batch- and cohort effect adjustment, b)
        meta-analysis differential abundance testing, c) meta-analysis
        unsupervised discrete structure (clustering) discovery, and d)
        meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
VignetteBuilder: knitr
SystemRequirements: glpk (>= 4.57)
Depends: R (>= 3.6)
Imports: maaslin3, metafor, fpc, igraph, ggplot2, dplyr, tidyr,
        stringr, cowplot, utils, stats, grDevices
Suggests: testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan,
        phyloseq, curatedMetagenomicData, genefilter
biocViews: Metagenomics, Microbiome, BatchEffect
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:51:18 UTC
RemoteUrl: https://github.com/bioc/MMUPHin
RemoteRef: HEAD
RemoteSha: 11850208e2c139914888d7e0b2e10fa12d4c747e
NeedsCompilation: no
Packaged: 2026-05-30 07:36:04 UTC; root
Built: R 4.6.0; ; 2026-05-30 07:49:06 UTC; windows
