# Hi-C Direct Caller Plus

## Documentation for package ‘HiCDCPlus’ version 1.21.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_1D_features | add_1D_features
add_2D_features | add_2D_features
add_hicpro_allvalidpairs_counts | add_hicpro_allvalidpairs_counts
add_hicpro_matrix_counts | add_hicpro_matrix.counts
add_hic_counts | add_hic_counts
construct_features | construct_features
construct_features_chr | construct_features_chr
construct_features_parallel | construct_features_parallel
expand_1D_features | expand_1D_features
extract_hic_eigenvectors | extract_hic_eigenvectors
generate_binned_gi_list | generate_binned_gi_list
generate_bintolen_gi_list | generate_bintolen_gi_list
generate_df_gi_list | generate_df_gi_list
get_chrs | get_chrs
get_chr_sizes | get_chr_sizes
get_enzyme_cutsites | get_enzyme_cutsites
gi_list2HTClist | gi_list2HTClist
gi_list_binsize_detect | gi_list_binsize_detect
gi_list_Dthreshold.detect | gi_list_Dthreshold_detect
gi_list_read | gi_list_read
gi_list_topdom | gi_list_topdom
gi_list_validate | gi_list_validate
gi_list_write | gi_list_write
hic2icenorm_gi_list | hic2icenorm_gi_list
hicdc2hic | hicdc2hic
hicdcdiff | hicdcdiff
HiCDCPlus | HiCDCPlus
HiCDCPlus_chr | HiCDCPlus_chr
HiCDCPlus_parallel | HiCDCPlus_parallel
HTClist2gi_list | HTClist2gi_list
straw | straw
straw_dump | straw_dump