BrickContainer_change_experiment_name
                        Change the location of HDF files in the
                        BrickContainer object
BrickContainer_change_output_directory
                        Change the location of HDF files in the
                        BrickContainer object
BrickContainer_get_path_to_file
                        Get the path to HDF files present in the Brick
                        container.
BrickContainer_list_chromosomes
                        Return the descriptive name of the
                        BrickContainer
BrickContainer_list_experiment_name
                        Return the descriptive name of the
                        BrickContainer
BrickContainer_list_files
                        Get the list of HDF files present in the Brick
                        container.
BrickContainer_list_output_directory
                        Return the output directory of the
                        BrickContainer
BrickContainer_list_resolutions
                        Return the descriptive name of the
                        BrickContainer
BrickContainer_unlink_resolution
                        Remove links to all Hi-C matrices for a given
                        resolution.
Brick_add_ranges        Store a ranges object in the Brick store.
Brick_call_compartments
                        Identify compartments in the Hi-C data
Brick_export_to_sparse
                        Export an entire resolution from a given
                        BrickContainer as a upper triangle sparse
                        matrix
Brick_fetch_range_index
                        Returns the position of the supplied ranges in
                        the binning table associated to the Hi-C
                        experiment.
Brick_fetch_row_vector
                        Return row or col vectors.
Brick_get_bintable      Returns the binning table associated to the
                        Hi-C experiment.
Brick_get_chrominfo     Get the chrominfo for the Hi-C experiment.
Brick_get_entire_matrix
                        Return an entire matrix for provided chromosome
                        pair for a resolution.
Brick_get_matrix        Return a matrix subset.
Brick_get_matrix_mcols
                        Get the matrix metadata columns in the Brick
                        store.
Brick_get_matrix_within_coords
                        Return a matrix subset between two regions.
Brick_get_ranges        Fetch the ranges associated to a rangekey or
                        chromosome.
Brick_get_values_by_distance
                        Return values separated by a certain distance.
Brick_get_vector_values
                        Return a N dimensional vector selection.
Brick_list_matrices     List the matrix pairs present in the Brick
                        store.
Brick_list_matrix_mcols
                        List the matrix metadata columns in the Brick
                        store.
Brick_list_mcool_normalisations
                        Get all available normalisations in an mcool
                        file.
Brick_list_mcool_resolutions
                        Get all available normalisations in an mcool
                        file.
Brick_list_rangekeys    List the ranges tables stored within the Brick.
Brick_list_ranges_mcols
                        Find out what metadata columns are associated
                        to a ranges with a certain name
Brick_load_cis_matrix_till_distance
                        Load a NxN dimensional sub-distance _cis_
                        matrix into the Brick store.
Brick_load_data_from_mcool
                        Load a NxN dimensional matrix into the Brick
                        store from an mcool file.
Brick_load_data_from_sparse
                        Identify compartments in the Hi-C data
Brick_load_matrix       Load a NxM dimensional matrix into the Brick
                        store.
Brick_local_score_differentiator
                        Do TAD Calls with Local Score Differentiator on
                        a Hi-C matrix
Brick_make_ranges       Creates a ranges object from provided vectors.
Brick_matrix_dimensions
                        Return the dimensions of a matrix
Brick_matrix_exists     Check if a chromosome pair exists.
Brick_matrix_filename   Return the filename of the loaded matrix
Brick_matrix_isdone     Check if a matrix has been loaded for a
                        chromosome pair.
Brick_matrix_issparse   Check if a matrix for a chromosome pair is
                        sparse.
Brick_matrix_maxdist    Get the maximum loaded distance from the
                        diagonal of any matrix.
Brick_matrix_minmax     Return the value range of the matrix
Brick_mcool_normalisation_exists
                        Check if a normalisation exists in an mcool
                        file.
Brick_rangekey_exists   Check to see if the Brick contains a ranges
                        with a certain name.
Brick_return_region_position
                        Provides the overlapping position (within) from
                        the bintable.
Brick_vizart_plot_heatmap
                        Create the entire HDF5 structure and load the
                        bintable
Create_many_Bricks      Create the entire HDF5 structure and load the
                        bintable
Create_many_Bricks_from_mcool
                        Create the entire HDF5 structure and load the
                        bintable from a mcool file
HiCBricks               A package for storing, accessing and plotting
                        Hi-C data
load_BrickContainer     Create a BrickContainer object from a JSON file
