# Empirical RNA-seq Sample Size Analysis

## Documentation for package ‘ERSSA’ version 1.31.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

combinations.partial | Example list of combinations generated by comb_gen function.
comb_gen | Calculate unique combinations of samples at varying replicate number
condition_table.full | Example table of sample names and conditions
condition_table.partial | Example table of sample names and conditions
count_filter | Filter RNA-seq expression table
count_table.filtered.partial | Example count table of GTEx RNA-seq experiment, fitered by count_filter function
count_table.full | Example count table of GTEx RNA-seq experiment
count_table.partial | Example count table of GTEx RNA-seq experiment
deg.partial | Example list of DE genes generated by edgeR
erssa | Empirical RNA-seq Sample Size Analysis
erssa_deseq2 | Run DESeq2 for computed sample combinations
erssa_deseq2_parallel | Run DESeq2 for computed sample combinations with parallel computing
erssa_edger | Run edgeR for computed sample combinations
erssa_edger_parallel | Run edgeR for computed sample combinations with parallel computing
ggplot2_dotplot | Plot number of DE genes
ggplot2_intersectPlot | Plot number of DE genes that is common across combinations
ggplot2_marginPlot | Plot percent increase in detection of DE genes across replicate levels
ggplot2_TPR_FPRPlot | Plot TPR and FPR of each combination