Package: CompensAID
Type: Package
Title: Automated detection tool for spillover errors
Version: 1.1.0
Authors@R: c(person("Rosan", "Olsman", 
                    role = c("aut", "cre"),
                    email = "r.olsman@erasmusmc.nl",
                    comment = c(ORCID = "0000-0001-5070-0476")),
             person("Sarah", "Bonte", 
                    role = c("aut"),
                    email = "sarahm.bonte@ugent.be",
                    comment = c(ORCID = "0000-0002-0637-4893")),
             person("Mattias", "Hofmans", 
                    role = c("aut"),
                    email = "mattias.hofmans@uzgent.be",
                    comment = c(ORCID = "0000-0003-2061-7617")),
             person("Malicorne", "Buysse", 
                    role = c("aut"),
                    email = "malicorne.buysse@uzgent.be"),
             person("Katrien","Van der Borght",
                    role="aut",
                    email="katrien.vanderborght@irc.vib-ugent.be",
                    comment = c(ORCID = "0000-0003-1635-4359")),
             person("Yvan", "Saeys", 
                    role = "aut", 
                    email="yvan.saeys@ugent.be",
                    comment = c(ORCID = "0000-0002-0415-1506")),
             person("Vincent", "van der Velden", 
                    role = "aut", 
                    email="v.h.j.vandervelden@erasmusmc.nl",
                    comment = c(ORCID = "0000-0001-9457-3763")),
             person("Sofie", "Van Gassen", 
                    role = "aut", 
                    email="sofie.vangassen@ugent.be",
                    comment = c(ORCID = "0000-0002-7119-5330")))
Description: The CompensAID is an automated quality control tool, which
        determines for each marker combination in the FCS file, whether
        there a potential presence of reference errors. Such reference
        errors, which represent themselves in the form of skewed
        populations, are detected by integrating the Secondary Stain
        Index (SSI) score. Marker combinations with an SSI < 1 are
        flagged by CompensAID.
URL: https://github.com/Olsman/CompensAID
BugReports: https://github.com/Olsman/CompensAID/issues
Depends: R (>= 4.1.0)
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: checkmate, dplyr, flowCore, flowDensity, ggcyto, ggplot2 (>=
        3.5.2), methods, ParallelLogger, reshape2, rlang, stats,
        tibble, tidyr, utils
biocViews: FlowCytometry, QualityControl, Preprocessing
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:06:16 UTC
RemoteUrl: https://github.com/bioc/CompensAID
RemoteRef: HEAD
RemoteSha: ba6a084a714d7a3ec063a715e741f2bc9e32c623
NeedsCompilation: no
Packaged: 2026-05-25 06:38:14 UTC; root
Author: Rosan Olsman [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5070-0476>),
  Sarah Bonte [aut] (ORCID: <https://orcid.org/0000-0002-0637-4893>),
  Mattias Hofmans [aut] (ORCID: <https://orcid.org/0000-0003-2061-7617>),
  Malicorne Buysse [aut],
  Katrien Van der Borght [aut] (ORCID:
    <https://orcid.org/0000-0003-1635-4359>),
  Yvan Saeys [aut] (ORCID: <https://orcid.org/0000-0002-0415-1506>),
  Vincent van der Velden [aut] (ORCID:
    <https://orcid.org/0000-0001-9457-3763>),
  Sofie Van Gassen [aut] (ORCID: <https://orcid.org/0000-0002-7119-5330>)
Maintainer: Rosan Olsman <r.olsman@erasmusmc.nl>
Built: R 4.6.0; ; 2026-05-25 06:39:51 UTC; windows
