ChIPseeker-package	ChIPseeker-package
.	dotFun
.ChIPseekerEnv	dot-ChIPseekerEnv
annotatePeak	annotatePeak
as.data.frame.csAnno	as.data.frame.csAnno
as.GRanges	as.GRanges
check_upstream_and_downstream	check_upstream_and_downstream
ChIPseeker	ChIPseeker-package
ChIPseekerCache	ChIPseekerCache
combine_csAnno	combine_csAnno
covplot	covplot
csAnno-class	csAnno-class
downloadGEObedFiles	downloadGEObedFiles
downloadGSMbedFiles	downloadGSMbedFiles
dropAnno	dropAnno
enrichAnnoOverlap	enrichAnnoOverlap
enrichPeakOverlap	enrichPeakOverlap
getAnnoStat	getAnnoStat
getBioRegion	getBioRegion
getGeneAnno	getGeneAnno
getGenomicAnnotation	getGenomicAnnotation
getGEOgenomeVersion	getGEOgenomeVersion
getGEOInfo	getGEOInfo
getGEOspecies	getGEOspecies
getNearestFeatureIndicesAndDistances	getNearestFeatureIndicesAndDistances
getPromoters	getPromoters
getSampleFiles	getSampleFiles
getTagMatrix	getTagMatrix
getTagMatrix.binning.internal	getTagMatrix.binning.internal
getTagMatrix.internal	getTagMatrix.internal
getTagMatrix2	getTagMatrix2
getTagMatrix2.binning.internal	getTagMatrix2.binning.internal
getTagMatrix2.internal	getTagMatrix2.internal
GRangesList	reexports
gsminfo	info
info	info
makeBioRegionFromGranges	makeBioRegionFromGranges
make_label	make_label
overlap	overlap
peakHeatmap	peakHeatmap
peakHeatmap_multiple_Sets	peakHeatmap_multiple_Sets
peak_Profile_Heatmap	peak_Profile_Heatmap
plotAnnoBar	plotAnnoBar-methods
plotAnnoBar,csAnno,ANY-method	plotAnnoBar-methods
plotAnnoBar,csAnno-method	csAnno-class
plotAnnoBar,list-method	plotAnnoBar-methods
plotAnnoBar.data.frame	plotAnnoBar
plotAnnoPie	plotAnnoPie-methods
plotAnnoPie,csAnno,ANY-method	plotAnnoPie-methods
plotAnnoPie,csAnno-method	csAnno-class
plotAnnoPie.csAnno	plotAnnoPie
plotAvgProf	plotAvgProf
plotAvgProf.binning	plotAvgProf.binning
plotAvgProf2	plotAvgProf2
plotDistToTSS	plotDistToTSS-methods
plotDistToTSS,csAnno,ANY-method	plotDistToTSS-methods
plotDistToTSS,csAnno-method	csAnno-class
plotDistToTSS,list-method	plotDistToTSS-methods
plotDistToTSS.data.frame	plotDistToTSS.data.frame
plotMultiProf	plotMultiProf
plotMultiProf.binning	plotMultiProf.binning
plotMultiProf.binning.internal	plotMultiProf.binning.internal
plotMultiProf.normal	plotMultiProf.normal
plotMultiProf.normal.internal	plotMultiProf.normal.internal
plotPeakProf	plotPeakProf
plotPeakProf2	plotPeakProf2
plotPeakProf_MultiWindows	plotPeakProf_MultiWindows
readPeakFile	readPeakFile
reexports	reexports
rel	reexports
seq2gene	seq2gene
show	show-methods
show,csAnno,ANY-method	show-methods
show,csAnno-method	csAnno-class
shuffle	shuffle
subset,csAnno-method	csAnno-class
tagHeatmap	tagHeatmap
tagMatrixList	info
ucsc_release	info
upsetplot	upsetplot-methods
upsetplot,csAnno-method	csAnno-class
vennpie	vennpie-methods
vennpie,csAnno-method	csAnno-class
vennplot	vennplot
vennplot.peakfile	vennplot.peakfile
