epigenomic road map adventures


[Up] [Top]

Documentation for package ‘erma’ version 1.23.0

Help Pages

erma-package epigenomic road map adventures
abbCIcols epigenomic road map adventures
abbCIstates epigenomic road map adventures
cellTypes Class '"ErmaSet"'
cellTypes-method Class '"ErmaSet"'
csProfile create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
erma epigenomic road map adventures
ErmaSet-class Class '"ErmaSet"'
farhSE epigenomic road map adventures
genemodel create GRanges instance with model for a gene
geneTxRange create GRanges instance with model for a gene
makeErmaSet Class '"ErmaSet"'
map2range create GRanges instance with model for a gene
mapmeta create a DataFrame instance providing metadata about the Epigenomics Roadmap
short_celltype metadata on states of 25-state model of chromatin from ChromImpute, and on cell types in the epigenome road map of April 2015
stateProf create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
stateProfile create a ggplot2 visualization of chromatin states over genomic addresses for a family of cell types managed in an ErmaSet instance
states_25 metadata on states of 25-state model of chromatin from ChromImpute, and on cell types in the epigenome road map of April 2015
subsetByRanges Class '"ErmaSet"'