build_network_se        Create a SummarizedExperiment for Network
                        Storage
classify_edges          Classify Edges as TP, FP, or FN
community_path          Community Detection and Pathway Enrichment
                        Analysis
community_similarity    Compare Community Assignments and Topological
                        Properties
compare_consensus       Compare Consensus and Reference Graphs or
                        STRINGdb Networks
compute_community_metrics
                        Compute Community Assignment Similarity Metrics
compute_topology_metrics
                        Compute Network Topological Properties
create_consensus        Create a Consensus Adjacency Matrix from
                        Multiple Networks
create_mae              Create MultiAssayExperiment from Multiple
                        Single-Cell Datasets
cutoff_adjacency        Threshold Adjacency Matrices Based on Shuffled
                        Network Quantiles
download_Atlas          Download and Load an RDS File from a URL
earlyj                  Modify Cell Names and Combine Datasets
edge_mining             Edge Mining of Gene Interactions Using PubMed
generate_adjacency      Generate Adjacency Matrices from Gene
                        Interaction Tables
infer_networks          Infer Gene Regulatory Networks from Expression
                        Matrices
init_py                 Initialize Python Environment for GRNBoost2
PCzinb                  Structure learning for count data using PC
                        algorithms
plot_community_comparison
                        Visualize Community and Topology Comparison
plot_network_comparison
                        Visualize Network Comparison
plotg                   Visualize Graphs from Adjacency Matrices
plotROC                 Plot ROC Curves for Inferred Networks
pscores                 Compute Performance Scores for Predicted
                        Adjacency Matrices
selgene                 Select Top Expressed Genes from Single-Cell
                        Data
stringdb_adjacency      Build Adjacency Matrices for Physical
                        Interactions from STRING (POST API)
symmetrize              Symmetrize Adjacency Matrices in a
                        SummarizedExperiment
toy_adj_matrix          Toy adjacency matrix for examples
toy_counts              Toy MultiAssayExperiment for Network Inference
zinb_simdata            Simulate Zero-Inflated Negative Binomial (ZINB)
                        Count Matrices with Sequencing Depth
