bin                     Bin spectra
Cardinal-package        Mass spectrometry imaging tools
colocalized             Colocalized features
deprecated              Deprecated and defunct objects in Cardinal
estimateDomain          Estimate shared domain
features                Find feature indices
findNeighbors           Find spatial neighbors
MassDataFrame-class     MassDataFrame: Extended data frame with key
                        columns
MeansTest               Linear model-based testing for summarized
                        imaging experiments
MSImagingArrays-class   MSImagingArrays: MS imaging data with arbitrary
                        m/z values
MSImagingExperiment-class
                        MSImagingExperiment: MS imaging data with
                        shared m/z values
normalize               Normalize spectra
peakAlign               Align peaks across spectra
peakPick                Peak pick spectra
peakProcess             Process peaks in mass spectra
pixels                  Find pixel indices
plot-image              Plot images from a spectral imaging dataset
plot-spectra            Plot spectra from a spectral imaging dataset
PositionDataFrame-class
                        PositionDataFrame: Extended data frame with key
                        columns
process                 Apply queued processing to spectra
readMSIData             Read mass spectrometry imaging data files
recalibrate             Recalibrate spectra
reduceBaseline          Reduce baselines in spectra
reexports               Re-exported objects from Cardinal
ResultsList-class       ResultsList: List of modeling results
selectROI               Select regions-of-interest in an image
simulateSpectra         Simulate a mass spectrum or MS imaging
                        experiment
sliceImage              Slice an image
smooth                  Smooth spectra
SpatialCV               Cross-validation for spectral imaging data
SpatialDGMM             Spatially-aware Dirichlet Gaussian mixture
                        model
spatialDists            Calculate spatially-smoothed distances
SpatialFastmap          Spatially-aware FastMap projection
SpatialKMeans           Spatially-aware K-means clustering
SpatialNMF              Non-negative matrix factorization
SpatialPCA              Principal components analysis
SpatialPLS              Partial least squares (projection to latent
                        structures)
SpatialResults-class    SpatialResults: Modeling results with spatial
                        metadata
SpatialShrunkenCentroids
                        Spatially-aware shrunken centroid clustering
                        and classification
spatialWeights          Calculate spatial weights
SpectraArrays-class     SpectraArrays: List of spectra arrays
SpectralImagingArrays-class
                        SpectralImagingArrays: Spectral imaging data
                        with arbitrary domain
SpectralImagingData-class
                        SpectralImagingData: Abstract class for
                        spectral imaging data
SpectralImagingExperiment-class
                        SpectralImagingExperiment: Spectral imaging
                        data with shared domain
spectrapply             Apply functions over spectra
subsetFeatures          Subset a spectral imaging dataset
summarizeFeatures       Summarize a spectral imaging dataset
writeMSIData            Write mass spectrometry imaging data files
XDataFrame-class        XDataFrame: Extended data frame with key
                        columns
