basilisk and hail

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Documentation for package ‘BiocHail’ version 1.11.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.data.frame	S3 support
as.data.frame.default	S3 support
as.data.frame.hail.table.Table	convert hail.table.Table to R data frame
bare_hail	bare interface to hail using reticulate
colnames-method	extract field names from hail.table.Table
filter	s3 support
filter.hail.table.Table	filter rows of a hail Table
get_1kg	interface to 1kg import
get_key	S3 generic for get_key
get_key.hail.table.Table	S3 method for get_key
get_ukbb_sumstat_10kloci_mt	interface to a small subset of UKBB summary stats in MatrixTable format
hail_init	initialize hail, using more options
hail_init_simple	initialize hail
hail_stop	stop hail
kg_3202	data.frame with metadata about 3202 samples genotyped against T2T reference
multipop_df	pheno_data component harvesting from columns of summary stats MatrixTable allowing for info on multiple populations in the pheno_data component
osn_1kg_path	Open Storage Network path to a zip of hail MatrixTable with some 1kg data for the Hail.is GWAS tutorial
osn_ukbb_sumst10k_path	Open Storage Network path to a zip of hail MatrixTable with a small subset of UKBB summary statistics as of 12/25/2022
path_1kg_annotations	generate path to installed annotations file
pcs_191k	HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
pcs_38k	HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
pheno_data_sec_2df	pheno_data component harvesting from columns of summary stats MatrixTable
rg_update	update the reference genome for a hail instance
rownames-method	acquire row names of a Hail Table, assuming key has been set
top2df	top-level annotation harvesting from columns of summary statistics MatrixTable
ukbb_init	initialize ukbb