addGeneLengths          Add gene lengths
BASiCSEstimate          Estimate BASiCS simulation parameters
BASiCSParams            The BASiCSParams class
BASiCSSimulate          BASiCS simulation
compareSCEs             Compare SingleCellExperiment objects
diffSCEs                Diff SingleCellExperiment objects
getParam                Get a parameter
getParams               Get parameters
kersplatEstimate        Estimate Kersplat simulation parameters
KersplatParams          The KersplatParams class
kersplatSample          Kersplat sample
kersplatSetup           Kersplat setup
kersplatSimulate        Kersplat simulation
listSims                List simulations
lun2Estimate            Estimate Lun2 simulation parameters
Lun2Params              The Lun2Params class
lun2Simulate            Lun2 simulation
lunEstimate             Estimate Lun simulation parameters
LunParams               The LunParams class
lunSimulate             Lun simulation
makeCompPanel           Make comparison panel
makeDiffPanel           Make difference panel
makeOverallPanel        Make overall panel
mfaEstimate             Estimate mfa simulation parameters
MFAParams               The MFAParams class
mfaSimulate             MFA simulation
minimiseSCE             Minimise SCE
mockBulkeQTL            Generate mock eQTL mapping results
mockBulkMatrix          Generate mock bulk population scale expression
                        data
mockEmpiricalSet        Generate set of "empirical" mock data
mockGFF                 Generate mock gff
mockVCF                 Generate mock vcf
newParams               New Params
Params                  The Params virtual class
phenoEstimate           Estimate PhenoPath simulation parameters
PhenoParams             The PhenoParams class
phenoSimulate           PhenoPath simulation
scDDEstimate            Estimate scDD simulation parameters
SCDDParams              The SCDDParams class
scDDSimulate            scDD simulation
setParam                Set a parameter
setParams               Set parameters
simpleEstimate          Estimate simple simulation parameters
SimpleParams            The SimpleParams class
simpleSimulate          Simple simulation
sparseDCEstimate        Estimate SparseDC simulation parameters
SparseDCParams          The SparseDCParams class
sparseDCSimulate        SparseDC simulation
splatEstimate           Estimate Splat simulation parameters
SplatParams             The SplatParams class
splatPopEstimate        Estimate population/eQTL simulation parameters
SplatPopParams          The SplatPopParams class
splatPopParseEmpirical
                        splatPopParseEmpirical
splatPopQuantNorm       Quantile normalize by sample to fit sc
                        expression distribution.
splatPopSimulate        splatPop simulation
splatPopSimulateMeans   splatPopSimulateMeans
splatPopSimulateSC      splatPopSimulateSC
splatSimulate           Splat simulation
summariseDiff           Summarise diffSCEs
zinbEstimate            Estimate ZINB-WaVE simulation parameters
ZINBParams              The ZINBParams class
zinbSimulate            ZINB-WaVE simulation
