An Interface for Immune Receptor and HLA Gene Reference Data
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Documentation for package ‘immReferent’ version 0.99.6
Help Pages
| immReferent-package | immReferent: An Interface for Immune Receptor and HLA Gene Reference Data |
| exportCellRanger | Export Reference Sequences to Cell Ranger VDJ Format |
| exportIgBLAST | Export Reference Sequences to IgBLAST Format |
| exportMiXCR | Export Reference Sequences to MiXCR Format |
| exportTRUST4 | Export Reference Sequences to TRUST4 Format |
| getIMGT | Download and Load Immune Receptor and HLA Sequences from IMGT |
| getOGRDB | Download and Load Immune Receptor Germline Sequences from OGRDB |
| immReferent | immReferent: An Interface for Immune Receptor and HLA Gene Reference Data |
| is_imgt_available | Check if IMGT Website is Available |
| is_ogrdb_available | Check if OGRDB Website is Available |
| listIMGT | List Datasets in the Local Cache |
| listOGRDB | List OGRDB Datasets in Local Cache |
| loadIMGT | Load Cached IMGT/HLA Sequences |
| loadOGRDB | Load Cached OGRDB Sequences |
| refreshIMGT | Force Re-download of IMGT/HLA Sequences |
| refreshOGRDB | Force Re-download of OGRDB Sequences |