.callbinary             Make system call for binaries
adapterremoval_usage    Print available arguments for adapterremoval
adapterremoval_version
                        Print version information of adapterremoval
bowtie2                 Interface to bowtie2 of bowtie2-2.2.3
bowtie2_build_usage     Print available arguments that can be passed to
                        bowtie2_build()
bowtie2_samtools        Interface to bowtie2-2.4.4 align function
bowtie2_usage           Print available arguments that can be passed to
                        bowtie2()
bowtie2_version         Print version information of bowtie2-2.4.4
bowtie2-build           Interface to bowtie2-2.4.4 build function
checkFileCreateable     Check if file is creatable
checkFileExist          Check if file exists
checkIndexType          Determine bowtie2 index type
checkPathExist          Check if path exists
checkSamtoolsExists     Check if samtools exists on the system
identify_adapters       identify adapters for paired-end reads
remove_adapters         Interface to bowtie2 of adapterremoval-2.2.1a
